Skip to main content

Table 4 Genomic variants found in genes other than cytokines analyzed with frequency of the alternative allele > 0.7

From: Immunological and genomic characterization of Ibizan Hound dogs in an endemic Leishmania infantum region

Gene1

rsID

Chromosome position

Ref.-alt.2

Frequency

Functional class of variant

AEED1

rs21889091

1: 70,201,861

G-A

1

Intronic

ARHGAP18

rs21879501

1: 68,152,162

G-A

1

Intronic

 

rs22026852

1: 68,221,142

T-C

0.96

Intronic

 

rs21954955

1: 68,225,797

T-C

0.93

Intronic

 

rs9165143

1: 68,178,311

C-T

0.76

Intronic

 

rs21905342

1: 68,254,443

T-C

0.71

Intronic

 

rs21948539

1: 68,258,523

T-C

0.70

Intronic

CD180

rs22872722

2:52,660,671

T-C

0.77

5′UTR

CIITA

rs24353887

6:31,796,528

A-G

1.00

Intronic

 

rs24328818

6:31,803,906

T-C

0.96

Intronic

CLVS2

rs21898983

1: 62,276,253

C-T

0.80

Intronic

DAPK1

rs21900944

1: 72,367,869

G-A

0.78

Intronic

ECHDC1

rs21938035

1: 66,013,856

A-G

0.87

Intronic

GNAI2

rs22932270

20:39,083,622

G-C

0.96

Intronic

GOLM1

rs21950391

1: 73,631,884

T-C

0.76

Intronic

HABP4

rs21886036

1: 70,370,888

T-A

0.91

Intronic

HEY2

rs9207199

1: 64,638,097

C-A

0.91

Intronic

IL12RB1

rs22916906

20:44,890,151

C-T

0.78

Intronic

 

rs22844706

20:44,906,998

G-C

0.78

Downstream

L3MBTL3

rs21966134

1: 68,652,597

T-C

0.83

Intronic

LAMA2

rs22024503

1: 7,706,395

A-G

1

Intronic

 

rs22040055

1: 67,843,651

A-C

1

Intronic

 

rs21975303

1: 68,074,486

T-C

1

Intronic

 

rs851817104

1: 67,689,922

A-G

0.98

Intronic

 

rs21912280

1: 67,694,283

T-C

0.98

Synonymous

 

rs21909819

1: 67,718,504

T-C

0.92

Intronic

 

rs21978490

1: 67,728,530

A-G

0.92

Intronic

 

rs21901417

1: 67,922,585

G-A

0.73

Intronic

LTBP1

rs22600228

17:26,509,918

C-T

1.00

Intronic

 

rs22585937

17:26,469,383

T-C

1.00

Intronic

 

rs22565021

17:26,402,720

C-T

1.00

Intronic

 

rs22617477

17:26,375,163

G-A

1.00

Intronic

 

rs22564606

17:26,144,284

C-T

0.98

Intronic

 

rs22598552

17:26,233,826

G-T

0.94

Intronic

 

rs22583693

17:26,283,669

G-A

0.92

Intronic

 

rs22600112

17:26,478,030

G-A

0.92

Intronic

 

rs22585869

17:26,451,018

C-G

0.87

Intronic

 

rs22564554

17:26,133,100

G-A

0.83

Intronic

 

rs22584546

17:26,513,340

T-C

0.79

Intronic

 

rs22569416

17:26,520,738

A-G

0.79

Intronic

 

rs22600186

17:26,500,115

C-T

0.73

Intronic

MITF

rs22864511

20:21,848,178

A-C

1.00

Intronic

PKIB

rs21960517

1: 62,012,877

G-A

0.85

Intronic

PTPN22

rs22559491

17:51,651,794

A-T

1.00

Intronic

 

rs22559538

17:51,663,769

G-A

1.00

Intronic

 

rs22582077

17:51,667,891

C-T

1.00

Intronic

 

rs22559449

17:51,633,544

A-G

0.90

Intronic

PTPRK

rs21887741

1: 66,895,650

G-C

1

Intronic

 

rs8721457

1: 66,692,393

G-C

0.98

Intronic

 

rs22013934

1: 66,866,914

T-C

0.98

Intronic

 

rs21951775

1: 66,740,449

A-G

0.98

Intronic

 

rs21939204

1: 66,833,054

T-C

0.98

Intronic

 

rs21951655

1: 66,940,821

G-T

0.80

Intronic

 

rs22038850

1: 66,626,458

G-T

0.78

Intronic

 

rs21963966

1: 66,635,731

C-T

0.78

Intronic

 

rs21890648

1: 66,648,882

A-G

0.77

Intronic

 

rs21914202

1: 66,663,772

C-T

0.77

Intronic

 

rs8868883

1: 66,673,590

T-C

0.77

Intronic

 

rs21893059

1: 66,612,866

C-T

0.76

Intronic

 

rs9021755

1: 6,599,857

C-T

0.75

Intronic

RAB38

rs22921195

21:12,120,865

T-C

1.00

Intronic

 

rs22917843

21:11,811,693

A-G

1.00

Intronic

 

rs22976236

21:11,791,901

G-A

0.96

Intronic

RASEF

rs21892604

1: 76,327,161

G-A

1.00

Intergenic

 

rs21894538

1: 76,416,494

C-T

1.00

Intronic

 

rs21913661

1: 76,423,140

A-G

1.00

Intronic

 

rs21984010

1: 76,452,566

G-A

1.00

Missense

 

rs21965379

1: 76,432,736

C-T

0.98

Intronic

 

rs21964231

1: 76,456,202

T-C

0.96

Intronic

 

rs21969829

1: 76,395,909

C-T

0.92

Intronic

RSPO3

rs21964628

1: 65,935,687

G-C

1.00

Intronic

 

rs8881600

1: 65,858,997

C-T

0.93

Intronic

 

rs9173069

1: 65,864,484

T-C

0.85

Intronic

 

rs22026455

1: 65,912,368

G-T

0.80

Intronic

 

rs21975949

1: 65,900,327

C-T

0.77

Intronic

 

rs9255550

1: 65,884,205

A-C

0.76

Intronic

 

rs21978415

1: 65,928,148

G-A

0.76

Intronic

SLC28A3

rs9157044

1: 75,042,990

C-A

0.90

Intronic

SLC35D2

rs21998807

1: 70,501,388

A-G

0.94

Intronic

SERINC1

rs21937411

1: 61,830,421

G-T

1.00

Missense

THEMIS

rs21975824

1: 66,376,836

T-C

0.98

Intronic

 

rs9237291

1: 66,433,882

C-T

0.98

Intronic

 

rs9158578

1: 6,416,081

A-C

0.95

3'UTR

 

rs8659520

1: 66,516,280

A-G

0.95

Intronic

 

rs21918658

1: 66,399,264

A-G

0.73

Intergenic

TF

rs23149486

23:30,383,100

A-T

1.00

Intronic

  1. Table shows the identify number (rsID), chromosome position, reference and alternative alleles, frequency of alternative variant in the analyzed samples, and functional class of variant
  2. 1AEED1 (or PRXL2C): AhpC/TSA antioxidant enzyme domain containing 1 (or Peroxiredoxin like 2C); ARHGAP18: Rho GTPase Activating Protein 18; CIITA: Class II Major Histocompatibility Complex Activator; CLVS2: Clavesin; DAPK1: Death-Associated Protein Kinase I; ECHDC1: Enoyl-CoA Hydratase Domain-Containing Protein 1; GNAI2: G Protein Subunit Alpha I2; GOLM1: Golgi Membrane Protein 1; HABP4: Hyaluron Binding Protein 4; HEY2: Hes Related Family BHLH Transcription Factor with YRPW Motif 2; IL12RB1: Interleukin 12 receptor subunit Beta 1; L3MBTL3: L3MBTL Histone Methyl-Lysine Binding Protein 3; LAMA2: Laminin Subunit Alpha 2; LTBP1: Latent Transforming Growth Factor Beta Binding Protein 1; MITF: Melanocyte Inducing Transcription Factor; PKIB: CAMP-Dependent Protein Kinase Inhibitor Beta; PTPN22: Protein Tyrosine Phosphatase Non-Receptor Type 22; PTPRK: Protein Tyrosine Phosphatase Receptor Type K; RAB38: Member RAS Oncogene Family; RASEF: RAS and EF-Hand Domain Containing; RSPO3: R-Spondin 3; SLC28A3: Solute Carrier Family 28 Member 3; SLC35D2: Solute Carrier Family 35 Member D2; SERINC1: Serine Incorporator 1; THEMIS: Thymocyte Selection Associated; TF: transferrin
  3. 2C: cytosine, T: thymine; A: adenine; G: guanine
Back to article page

Parasites & Vectors

ISSN: 1756-3305

Contact us