Table 3 Nucleotide composition and skews of Aonchotheca putorii mitochondrial genome
Gene | Nucleotide frequency | A + T (%) | AT-skew | GC-skew | |||
|---|---|---|---|---|---|---|---|
A (%) | G (%) | T (%) | C (%) | ||||
atp6 | 34.6 | 11.2 | 46.2 | 8.0 | 80.8 | − 0.144 | 0.166 |
atp8 | 36.3 | 11.0 | 46.6 | 6.1 | 82.9 | − 0.124 | 0.280 |
cox1 | 32.7 | 15.1 | 39.8 | 12.4 | 72.5 | − 0.096 | 0.096 |
cox2 | 36.7 | 14.5 | 36.3 | 12.5 | 73.0 | 0.006 | 0.070 |
cox3 | 31.8 | 13.8 | 43.7 | 10.7 | 75.5 | − 0.158 | 0.126 |
cytb | 27.1 | 17.6 | 46.8 | 8.5 | 73.9 | − 0.267 | 0.345 |
nad1 | 36.3 | 12.5 | 40.0 | 11.2 | 76.3 | − 0.049 | 0.056 |
nad2 | 39.9 | 6.0 | 41.8 | 12.3 | 81.7 | − 0.023 | − 0.345 |
nad3 | 30.3 | 10.7 | 50.3 | 8.7 | 80.6 | − 0.248 | 0.103 |
nad4 | 41.1 | 8.4 | 40.1 | 10.5 | 81.2 | 0.013 | 0.109 |
nad4L | 42.6 | 10.0 | 37.0 | 10.4 | 79.6 | 0.071 | − 0.020 |
nad5 | 39.3 | 8.7 | 38.7 | 13.3 | 78.0 | 0.007 | − 0.206 |
nad6 | 26.8 | 10.9 | 55.6 | 6.7 | 82.4 | − 0.349 | 0.235 |
rrnS | 34.9 | 14.4 | 41.4 | 9.3 | 73.3 | − 0.085 | 0.220 |
rrnL | 41.1 | 11.1 | 40.4 | 7.4 | 81.5 | 0.009 | 0.200 |
22 tRNAs | 36.5 | 11.0 | 42.7 | 9.8 | 79.2 | − 0.079 | 0.055 |
NCR | 43.5 | 7.8 | 40.9 | 7.8 | 84.4 | 0.031 | 0 |
Total | 35.8 | 12.7 | 42.2 | 9.3 | 78.0 | − 0.082 | − 0.157 |