Table 4 Amino acid frequency and relative synonymous codon usage of Aonchotheca putorii mitochondrial protein-coding genes
Amino acid | Codon | Number | RSCU (%) | Amino acid | Codon | Number | RSCU (%) |
|---|---|---|---|---|---|---|---|
Phe (F) | TTT | 307 | 1.76 | Tyr (Y) | TAT | 134 | 1.71 |
Phe (F) | TTC | 41 | 0.24 | Tyr (Y) | TAC | 23 | 0.29 |
Leu (L) | TTA | 317 | 3.91 | Stop (*) | TAA | 10 | 2 |
Leu (L) | TTG | 67 | 0.83 | Stop (*) | TAG | 0 | 0 |
Leu (L) | CTT | 22 | 0.27 | His (H) | CAT | 41 | 1.49 |
Leu (L) | CTC | 6 | 0.07 | His (H) | CAC | 14 | 0.51 |
Leu (L) | CTA | 67 | 0.83 | Gln (Q) | CAA | 47 | 1.84 |
Leu (L) | CTG | 8 | 0.1 | Gln (Q) | CAG | 4 | 0.16 |
Ile (I) | ATT | 338 | 1.76 | Asn (N) | AAT | 164 | 1.62 |
Ile (I) | ATC | 46 | 0.24 | Asn (N) | AAC | 38 | 0.38 |
Met (M) | ATA | 341 | 1.74 | Lys (K) | AAA | 119 | 1.82 |
Met (M) | ATG | 52 | 0.26 | Lys (K) | AAG | 12 | 0.18 |
Val (V) | GTT | 74 | 1.64 | Asp (D) | GAT | 48 | 1.71 |
Val (V) | GTC | 12 | 0.27 | Asp (D) | GAC | 8 | 0.29 |
Val (V) | GTA | 82 | 1.82 | Glu (E) | GAA | 75 | 1.85 |
Val (V) | GTG | 12 | 0.27 | Glu (E) | GAG | 6 | 0.15 |
Ser (S) | TCT | 95 | 1.95 | Cys (C) | TGT | 28 | 1.47 |
Ser (S) | TCC | 13 | 0.27 | Cys (C) | TGC | 10 | 0.53 |
Ser (S) | TCA | 106 | 2.18 | Trp (W) | TGA | 104 | 1.81 |
Ser (S) | TCG | 9 | 0.19 | Trp (W) | TGG | 11 | 0.19 |
Pro (P) | CCT | 38 | 1.49 | Arg (R) | CGT | 17 | 1.48 |
Pro (P) | CCC | 3 | 0.12 | Arg (R) | CGC | 0 | 0 |
Pro (P) | CCA | 56 | 2.2 | Arg (R) | CGA | 26 | 2.26 |
Pro (P) | CCG | 5 | 0.2 | Arg (R) | CGG | 3 | 0.26 |
Thr (T) | ACT | 64 | 1.71 | Ser (S) | AGT | 47 | 0.97 |
Thr (T) | ACC | 15 | 0.4 | Ser (S) | AGC | 1 | 0.02 |
Thr (T) | ACA | 65 | 1.73 | Ser (S) | AGA | 114 | 2.34 |
Thr (T) | ACG | 6 | 0.16 | Ser (S) | AGG | 4 | 0.08 |
Ala (A) | GCT | 38 | 1.63 | Gly (G) | GGT | 46 | 1.29 |
Ala (A) | GCC | 15 | 0.65 | Gly (G) | GGC | 5 | 0.14 |
Ala (A) | GCA | 36 | 1.55 | Gly (G) | GGA | 80 | 2.24 |
Ala (A) | GCG | 4 | 0.17 | Gly (G) | GGG | 12 | 0.34 |