Genetic marker | Type of PCRa | Sample typeb | Type of study | References |
---|---|---|---|---|
18S | cPCR | Fecal | •Cross sectional | [93] |
 |  |  | •Molecular technique | [21] |
 |  |  | •Cross sectional | [94] |
 |  |  | •Prospective | [95] |
 |  |  | •Cross sectional | [96] |
 |  | Larva | •Case report | [97] |
 |  |  | •Cross sectional | [98] |
 |  |  | •Case report | [99] |
 |  |  | •Molecular technique | [40] |
 |  |  | •Cross sectional and phylogenetics | [100] |
 |  |  | •Cross sectional and phylogenetics | [101] |
 |  |  | •Cross sectional, phylogenetics, and genetic diversity | [42] |
 |  |  | •Cross sectional, phylogenetics, and genetic diversity | [102] |
 |  |  | •Phylogenetics | [103] |
 |  |  | •Cross sectional and genetic diversity | [104] |
 |  |  | •Case report | [105] |
 |  |  | •Cross sectional and phylogenetics | [106] |
 |  |  | •Cross sectional and phylogenetics | [107] |
 |  | Serum | •Cross sectional | [47] |
 | Multiplex cPCR | Larva | •Molecular technique | [108] |
 | RT-PCR | Fecal | •Cross sectional | [109] |
 |  |  | •Cross sectional | [110] |
 |  |  | •Cross sectional | [111] |
 |  |  | •Cross sectional | [112] |
 |  |  | •Cross sectional | [113] |
 | Multiplex RT-PCR | Larva | •Molecular technique | [114] |
 | LAMP | Urine | •Molecular technique | [52] |
 | cPCR, Illumina | Fecal | •Cross sectional, phylogenetics, molecular technique | [115] |
 | cPCR, RT-PCR, Illumina | Fecal | •Cross sectional, phylogenetics, genotyping | [116] |
28S | cPCR | Larva | •Cross sectional and phylogenetics | [101] |
 | RT-PCR | Fecal | •Molecular technique | [117] |
 | LAMP | Larva | •Molecular technique | [118] |
ITS1 | Nested PCR | Fecal | •Cross sectional | [119] |
 |  | Larva | •Cross sectional | [120] |
 | Multiplex cPCR | Fecal | •Case report | [121] |
Repetitive elements | RT-PCR, Illumina | Larva | •Molecular technique | [122] |
MSP | cPCR | Larva | •Cross sectional and phylogenetics | [101] |
12S | cPCR | Larva | •Phylogenetics | [123] |
 | Illumina | Larva | •DNA metabarcoding | [51] |
16S | cPCR | Larva | •Phylogenetics | [123] |
 | Illumina | Larva | •DNA metabarcoding | [51] |
COI | cPCR | Larva | •Cross sectional and phylogenetics | [100] |
 |  |  | •Case report | [99] |
 |  |  | •Cross sectional and phylogenetics | [101] |
 |  |  | •Cross sectional, phylogenetics, and genetic diversity | [42] |
 |  |  | •Cross sectional, phylogenetics, and genetic diversity | [102] |
 |  |  | •Phylogenetics | [124] |
 |  |  | •Case report | [105] |
 |  |  | •Cross sectional and phylogenetics | [106] |
 |  | Serum | •Cross sectional | [47] |
 | Nested PCR | Fecal | •Phylogenetics and genetic diversity | [41] |
 | cPCR, Illumina | Fecal | •Cross sectional, phylogenetics, molecular technique | [115] |
 |  |  | •Cross sectional, phylogenetics, genotyping | [116] |
Metagenome | Illumina | Cerebrospinal fluid | •Case report | [50] |
 |  | Bronchoalveolar lavage fluid | •Cross sectional | [49] |
 |  |  | •Cross-sectional | [48] |
Whole genome | Illumina | Larva | •Genomics | [125] |
 |  |  | •Cross sectional and phylogenetics | [106] |
 |  |  | •Phylogenetics and genomics | [126] |