Babesia spp. in ticks and wildlife in different habitat types of Slovakia

Background Babesiosis is an emerging and potentially zoonotic disease caused by tick-borne piroplasmids of the Babesia genus. New genetic variants of piroplasmids with unknown associations to vectors and hosts are recognized. Data on the occurrence of Babesia spp. in ticks and wildlife widen the knowledge on the geographical distribution and circulation of piroplasmids in natural foci. Questing and rodent-attached ticks, rodents, and birds were screened for the presence of Babesia-specific DNA using molecular methods. Spatial and temporal differences of Babesia spp. prevalence in ticks and rodents from two contrasting habitats of Slovakia with sympatric occurrence of Ixodes ricinus and Haemaphysalis concinna ticks and co-infections of Candidatus N. mikurensis and Anaplasma phagocytophilum were investigated. Results Babesia spp. were detected in 1.5 % and 6.6 % of questing I. ricinus and H. concinna, respectively. Prevalence of Babesia-infected I. ricinus was higher in a natural than an urban/suburban habitat. Phylogenetic analysis showed that Babesia spp. from I. ricinus clustered with Babesia microti, Babesia venatorum, Babesia canis, Babesia capreoli/Babesia divergens, and Babesia odocoilei. Babesia spp. amplified from H. concinna segregated into two monophyletic clades, designated Babesia sp. 1 (Eurasia) and Babesia sp. 2 (Eurasia), each of which represents a yet undescribed novel species. The prevalence of infection in rodents (with Apodemus flavicollis and Myodes glareolus prevailing) with B. microti was 1.3 % in an urban/suburban and 4.2 % in a natural habitat. The majority of infected rodents (81.3 %) were positive for spleen and blood and the remaining for lungs and/or skin. Rodent-attached I. ricinus (accounting for 96.3 %) and H. concinna were infected with B. microti, B. venatorum, B. capreoli/B. divergens, Babesia sp. 1 (Eurasia), and Babesia sp. 2 (Eurasia). All B. microti and B. venatorum isolates were identical to known zoonotic strains from Europe. Less than 1.0 % of Babesia-positive ticks and rodents carried Candidatus N. mikurensis or A. phagocytophilum. Conclusion Our findings suggest that I. ricinus and rodents play important roles in the epidemiology of zoonotic Babesia spp. in south-western Slovakia. Associations with vertebrate hosts and the pathogenicity of Babesia spp. infecting H. concinna ticks need to be further explored. Electronic supplementary material The online version of this article (doi:10.1186/s13071-016-1560-z) contains supplementary material, which is available to authorized users.


Background
Babesia spp. are tick-transmitted hemoprotozoans infecting a number of mammalian and some bird species, and together with Theileria spp. they are referred to as piroplasmids (order Piroplasmida) [1]. Species of Babesia vary in their virulence and can cause babesiosis in humans and animals [2]. The first case of human babesiosis in Europe was reported from Croatia in 1957 [3]. Since then, the number of cases in Europe has increased [4,5]. Three cases of human babesiosis have been reported from Slovakia since 1991 [6]. Based on classical taxonomy, piroplasmids include three groups: (i) Theileria, i.e. Theileria capreoli (Clade V as defined in [1]); (ii) Babesia (sensu stricto), i.e. Babesia canis, Babesia venatorum, Babesia odocoilei, Babesia divergens and B. capreoli (Clade VI as defined in [1]); and (iii) Babesia (sensu lato), i.e. Babesia microti (Clade I as defined in [1]) [1,7]. Molecular phylogenetic analyses confirmed that B. microti is a species complex, consisting of genetically diverse isolates that fall into a number of different clades [8]. Within these clades, the zoonotic "Jena" type [9] and the non-zoonotic "Munich" type [10] can be discriminated between rodent isolates from Europe. Common causative agents of human babesiosis in Europe are Babesia divergens and the B. divergens-like species, B. venatorum, and B. microti-like species [2].
Ixodid ticks are the primary vectors of Babesia spp. Zoonotic species of Babesia are transmitted mostly by species of the genus Ixodes. Ixodes ricinus is a common tick species in Slovakia [11] and in some areas it is known to cooccur with other species, such as Ixodes trianguliceps [12], Dermacentor reticulatus [13] and Haemaphysalis concinna [11,13]. The immature stages of I. ricinus, H. concinna and Dermacentor spp. ticks feed on small and mediumsized mammals and, in addition, immature I. ricinus and H. concinna ticks are ectoparasites of birds [14,15]. In contrast, adults of these tick species parasitize medium and large-sized mammals. Large domestic and wildliving ruminants (e.g. cattle and roe deer), but also ticks, due to transovarial transmission, can serve as reservoirs for B. divergens and B. venatorum. Small mammals are reservoirs for the transtadiallytransmitted B. microti [16,17]. Some bird species can potentially contribute to the spread of piroplasmids by carrying infected ticks, infect ticks via infectious blood, or act as hosts for transmission of pathogens between ticks through co-feeding [18].
Data on the presence of piroplasmids and their medical and veterinary importance in Slovakia are rare and limited to a few studies. Some studies focused on Babesia spp. present in I. ricinus [13,19] and rodents [12], while others dealt with B. canis infections in D. reticulatus ticks or dogs [20,21]. Although the presence of piroplasmids in H. concinna was confirmed in neighbouring countries [22,23], to our knowledge the competence of H. concinna to transmit Babesia parasites has not been studied in Slovakia.
Recently, the geographic area where piroplasmids have been detected in ticks and cases of babesiosis have been recognized has expanded and new species of Babesia have been found [23][24][25]. Therefore, local investigations are essential to assess the emergence of new parasites and the potential risk of human and animal diseases.
The main objective of this study was: (i) to investigate the presence and determine the prevalence and diversity of Babesia spp. in selected wild-living vertebrate hosts, focusing on rodents and birds, and on questing ticks and ticks feeding on rodents in two different habitat types of south-western Slovakia with sympatric occurrence of I. ricinus and H. concinna ticks; (ii) to assess ecological associations and phylogenetic relationships of the Babesia spp. found in ticks and vertebrate hosts in the study area; and (iii) to assess co-infections of Babesia-infected ticks and rodents with other microorganisms.

Methods
Study area, collection of ticks, trapping of rodents and birds, ethical approval The two study sites are located in the Small Carpathian Mountains (south-western Slovakia) and differ in their habitat type. The first site (48.17-48.20 N, 17.07-17.10E) is characterized by significant human intervention and represents an urban/suburban habitat in Bratislava used for relaxing, cycling, dog walking, and jogging among others. The second site (48.37-48.38 N, 17.30-17.32E) is a natural habitat at Fúgelka represented by a non-fragmented forest, predominantly perambulated by hikers, foresters, and gamekeepers [for details, see 11]. Collection of questing ticks and trapping of rodents were performed as described previously [26]. In brief, questing ticks were collected from year 2011 to 2013 by dragging the vegetation and subsequently their species identity and life stage was determined. Rodents were livetrapped from year 2012 to 2014 by using Swedish bridge metal traps and sacrificed according to current laws of the Slovak Republic, approved by the Ministry of Environment of the Slovak Republic, Regional Environmental Office in Bratislava (licence ZPO-594/2012-SAB). Blood samples were obtained from sinus orbitalis, spleens, lungs, skin biopsy samples taken from ears (further as "skin"), and rodent-attached ticks were gathered from each rodent (at least five specimens of each tick species and life stage, respectively) for further analysis. Ornithological mist nets were used to trap wild-living birds in the urban/suburban habitat during 2012-2013. Each captured bird was identified, ringed, inspected for ectoparasites (data not shown) and blood samples were taken from the vena ulnaris cutanea before release as described in [27]. Birds were handled under the permission of the Ministry of Environment of the Slovak Republic, No. 9368/2011-2.2.

DNA extraction
Genomic DNA was isolated from individual ticks and rodent tissues by using the Macherey-Nagel NucleoSpin® Tissue kit (Düren, Germany) according to the manufacturer's instructions. Quantity and quality of the isolated DNA was assessed with a spectrophotometer Nanodrop 2000c and stored at -20°C until further studied.

PCR amplification and sequence analysis
DNA amplification by PCR was carried out following the protocol described by [28]. Babesia genus-specific BJ1 (5'-GTC TTG TAA TTG GAA TGA TGG-3') and  BN2 (5'-TAG TTT ATG GTT AGG ACT ACG-3') primers were used to amplify a 450 bp region of the 18S ribosomal RNA gene. PCR reactions were carried out in a volume of 25 μl containing 5 μl of DNA template and 20 μl of PCR mix: 0.125 μl of HotStarTaq Plus DNA Polymerase (5 U/μl; Qiagen, Hilden, Germany), 0.5 μl of each primer (10 μM), 0.5 μl of dNTP (10 mM), 2.5 μl of Coral Load PCR buffer (containing 15 mM MgCl 2 ), 1 μl of MgCl 2 (25 mM) and 14.875 μl of nuclease free water. Negative as well as positive controls were included in each run. Amplification was performed in a BioRad t 100 thermal cycler (USA). The thermal cycle reaction consisted of an initial denaturation step (5 min at 95°C), followed by 35 cycles of denaturation (1 min at 94°C), annealing (1 min at 55°C), and elongation (2 min at 72°C). A final extended amplification step of 5 min at 72°C was carried out. PCR products were separated by electrophoresis in a 1.5 % agarose gel and treated with Good-View™ Nucleic Acid stain (SBS Genetech, China) to be visualized by UV transillumination.
PCR positive samples were purified and analysed by sequencing with forward and reverse primers used for PCR amplification by Macrogen (Amsterdam, the Netherlands). Sequences were deposited in the GenBank database under accession numbers KU362887 − KU362905 and KU550676 − KU550699.

Phylogenetic analysis
Determined 18S rRNA gene nucleotide sequences were used as query in a BLASTn search in order to identify and download most closely related 18S rRNA gene sequences of well-defined piroplasmid species from GenBank. In addition, 18S rRNA gene sequences of representative piroplasmid species were downloaded in order to allow species delineation in the phylogenetic analysis. A multiple alignment of the hypervariable region of 95 18S rRNA gene sequences comprising selected and analysed sequences including the 18S rRNA gene of Cardiosporidium cionae was done using MUSCLE [29]. Positions containing gaps and missing data were eliminated from the 514 nucleotide-alignment to finally result in 385 positions in the final dataset. After estimation of shape parameter, the K2 + G + I parameter model was applied to generate a maximum likelihood tree [30]. Phylogenetic analysis was carried out using the MEGA6 software [31].

Statistical analyses
Differences in the prevalence of infection with Babesia spp. in questing ticks, ticks attached to rodents, and in rodents were analysed between habitats, years, and rodent species and genders applying Fisher's exact test, supplemented with Mantel-Haenszel common odds ratio estimate and its 95 % confidence interval in cases when two prevalences were compared. Rodents positive for spleen, blood and/or lungs were considered Babesia-positive. The 95 % confidence intervals of the prevalences in questing ticks, rodent-attached ticks and rodents were computed using a bootstrap technique. Logistic regression was used to estimate the effect of habitat type and year on the probability of tick infection and the effect of habitat type, rodent species and gender on the probability of rodent infection. Backward stepwise method was used to find the set of variables significantly affecting the probability of tick and rodent infection. Tests for the significance of the effects in the model were performed via the Wald statistic. Results on the presence of A. phagocytophilum and Candidatus N. mikurensis (CNM) in the same questing ticks, and rodents available from previous studies [26,32], were used to calculate the probability of co-infections with Babesia spp. and analyse the dependence of the microorganisms on the habitat type using Fisher's exact test. Differences were considered significant at P < 0.05 in all tests. Statistical analyses were performed with IBM SPSS Statistics, version 22 [33] and Statistica software, version 12 [34].
The occurrence of various species of Babesia in questing I. ricinus differed between habitats as well as between nymphs and adults (  Table S2). Babesia canis (from four nymphs and one male) and Babesia odocoilei (from one nymph) were exclusively found in I. ricinus from Bratislava. Babesia capreoli/B. divergens was found in adult I. ricinus ticks from Bratislava and in one I. ricinus nymph from Fúgelka ( Fig. 1). Furthermore, Babesia sp. 1 (Eurasia) (from four nymphs and one female from Bratislava) and Babesia sp. 2 (Eurasia) (from one male from Fúgelka) were found to infect questing H. concinna ticks.
The occurrence of Babesia spp. also differed significantly between years (P = 0.004). The proportion of B. microti-infected ticks was the higest in 2011 (50.0 %) and the lowest in 2013 (11.4 %). The proportion of B. venatorum-infected ticks was also the higest in 2011 (57.7 %) but it was the lowest in 2012 (7.7 %) (see Additional file 1: Table S3). There was also a significant difference in the proportion of tick developmental stages infected with B. microti and B. venatorum (P = 0.012). This was most obvious for B. microti, which was more prevalent in nymphs than in adults (86.4 % vs 13.6 %). In the other Babesia spp. the trend was not so strong (see Additional file 1: Table S4).
In addition to Babesia spp., Theileria sp. DNA was detected in two H. concinna nymphs from Bratislava.
The analysis of simultaneous effects of habitat and year on the probability of the overall infection of I. ricinus with Babesia spp. by logistic regression resulted in a significant effect of habitat (Bratislava: parameter estimate B = -0.533, exp(B) = 0.587, P = 0.021). The variable removed by backward method was year. Considering only infections with B. microti, logistic regression confirmed the significant effect of habitat, with about three    (Table 2).
Significant difference in the overall prevalence of infection with B. microti was determined between years: 3.7 and 25.0 % of rodents were found to be positive in 2012 and 2013, respectively, but no rodent was found to be infected in 2014 (P = 0.004) ( Table 3). Considering habitat, the difference between years was statistically significant in Fúgelka, but not in Bratislava (Table 3).
Simultaneous effects of habitat, rodent species, and gender on the probability of infection with B. microti, analysed by logistic regression, resulted in a significant effect of species ( Table S5). The probability of infection was the highest for Microtus spp., and the risk of infection of rodent males was ten times higher than that of females.  (Table 4).

Co-infections in ticks and rodents
With regard to co-infections and prevalence patterns, we analysed results for Babesia spp. and data from previous studies on prevalences of A. phagocytophilum and CNM in ticks and rodents [26,32]. Out of the 3874 questing I. ricinus screened for the presence of the three microorganisms, co-infection of Babesia spp. and A. phagocytophilum was detected in two ticks (0.05 %; one male infected with B. venatorum and one nymph infected with B. canis from Bratislava). Co-infection of Babesia spp. and CNM was  Considering rodent-attached ticks, only co-infection of B. microti and A. phagocytophilum was detected in three I. ricinus nymphs feeding on a B. microti-positive A. flavicollis male from Bratislava. The remaining infected engorged ticks carried only one microorganism.

Babesia spp. in birds
In total, 58 blood samples from birds representing 11 species were screened for Babesia spp. (Appendix 1). None of the birds was found to be infected.

Phylogenetic analysis
All piroplasmid-positive PCR products from questing ticks, ticks attached to rodents, and rodents originating from both study sites were sequenced and are listed in Additional file 1: Table S7. The phylogenetic analysis shows that the majority of isolates segregate with a highly significant bootstrap into clades of Theileria sp., B. microti, B. venatorum, B. canis, B. odocoilei, and a B. capreoli/B. divergens clade, respectively. However, some isolates segregate into two novel clades strongly suggesting that they represent previously unrecognized species designated in this study as Babesia sp. 1 (Eurasia) and Babesia sp. 2 (Eurasia), respectively (Fig. 2). In the phylogenetic analysis, all identified B. microti isolate sequences clustered with strong support into a single clade with the Jena/ Germany genotype (Fig. 2). Sequences of 17 isolates (KU362887−KU362896 and KU550676−KU550682; from questing and rodent-attached I. ricinus, rodent-attached H. concinna and from rodents) corresponding to 114 analysed 18S rRNA gene sequences show a 100 % sequence identity with the pathogenic B. microti Jena/Germany genotype (EF413181). Other isolates displaying a 100 % sequence identity not included in the tree analysis are a B. microti isolate from a rodent (KJ649297) and from a questing I. ricinus from Slovakia (KJ649287).
18S rRNA gene sequences of eight isolates (KU362897 −KU362900 and KU550683−KU550686; from questing and rodent-attached I. ricinus) corresponding to 28 analysed nucleotid sequences segregated with a significant bootstrap into a single clade with the B. venatorum genotype (FJ215873) known to cause zoonotic babesiosis in Europe. Other deposited sequences found to be 100 % identical to those of this study were a B. venatorum isolate from I. ricinus from Slovakia (KJ152840) and the Czech Republic (KJ465867), but also to a B. venatorum isolate identified in Ixodes persulcatus from Mongolia (KR493908).
18S rRNA gene sequences from isolates from five questing I. ricinus (KU362904 and KU362905) segregated with highly significant support into a clade with B. canis isolate AY072926 identified in a dog in Croatia. Isolate sequences identified in the GenBank database that were found to be 100 % identical represent B. canis from a naturally infected domestic dog from Poland (KT844907) and an isolate identified from D. reticulatus from Russia (AY649326).
18S rRNA gene sequences isolated from questing I. ricinus (KU362901 and KU362902) and a sequence from a rodent-attached I. ricinus (KU362903) clustered in a strongly supported clade with sequences of B. capreoli and B. divergens. Identified sequences were also found to be 100 % identical with sequences deposited in the GenBank database from B. capreoli from I. ricinus from the Czech Republic (KJ465869) and with a strain isolated from roe deer from Germany (JX627353), and 99 % identical with B. divergens isolated from a roe deer from Slovenia (AY572456).
Four isolates from questing and rodent-attached H. concinna were placed into a strongly supported single clade with isolate Babesia sp. Kh-Hc232 from H. concinna (KJ486560) and Babesia sp. Irk-Ip525 from I. persulcatus (KJ486566). This clade represents a novel species of Babesia here designated as Babesia sp. 1 (Eurasia). The 18S rRNA gene sequence of the isolate KU550694 differs from isolate sequences KU550690−KU550693 by a single base pair.
Sequences isolated from questing and rodent-attached H. concinna ticks (KU550688 and KU550689) appeared in a strongly supported clade with the sequence of Babesia sp. Kh-Hc222 strain from H. concinna identified in Russia (KJ486568). The sequences in this clade have been designated as Babesia sp. 2 (Eurasia) as they most probably represent an additional novel species.
Other 18S rRNA gene sequences isolated in this work from I. ricinus (KU550687) clustered in a strongly supported clade with B. odocoilei isolates U16369, KC460321, AY294206, and AY144689 that are 99 % identical with the former. However, the sequence KU550687 is also placed with strong support as sister to this clade and may represent a geographical variant of this species. Other

Other Apicomplexa detected in ticks and rodents
Isolates from four questing I. ricinus showed identity with Hepatozoon canis DNA. Hepatozoon spp. DNA was also identified in 26 M. glareolus and one A. flavicollis (manuscript in preparation).
18S rRNA gene sequences from six isolates from rodent skin biopsies showed identity with corresponding sequences of Sarcocystis spp. Four identical sequences from M. arvalis (KU550697) revealed a 96 % identity to the 18S rRNA gene sequence of Sarcocystis sp. from the large oriental voles (Eothenomys miletus) from China (KF309698 and KF309699). One sequence from M. glareolus (KU550699) showed a 97 % identity to the same strains (KF309698 and KF309699). One sequence obtained from M. glareolus (KU550698) showed a 97 % identity to the sequence of Sarcocystis rodentifelis from a rodent in the Czech Republic (AY015111), Sarcocystis rileyi from a mallard duck (Anas platyrhynchos) from Lithuania (HM185742), Sarcocystis speeri from an opossum (Didelphis virginiana) from Argentina (KT207459), and Sarcocystis sp. from a brown bear (Ursus arctos) from USA (EF564590).

Discussion
There are only a few studies of piroplasmid parasites associated with ticks and wildlife from Slovakia. This calls for further investigations on the distribution and diversity of piroplasmid species and their relevance to public and animal health in the region. In the present study, questing and rodent-attached ticks, rodents and birds were screened using molecular methods for the presence of Babesia spp. to investigate the vectorhostpathogen associations in the urban/suburban and natural habitats of south-western Slovakia. The study area is characteristic of a sympatric occurrence of I. ricinus and H. concinna ticks and a great diversity of wildlife [11].
We found 1.5 % of questing I. ricinus and 6.6 % of H. concinna ticks to be infected with Babesia parasites. In previous studies from Slovakia, the prevalence of infection with Babesia spp. in questing I. ricinus was similar and varied from 0.4 to 2.7 % [12,13,19] while no reports exist on the presence of piroplasmids in questing H. concinna. Generally, Babesia spp. prevalences from 0.4 to 2.7 % have been reported for questing I. ricinus in temperate latitudes of Europe [28,[35][36][37][38][39][40][41][42][43]]. Yet at particular sites 4.6 to 9.6 % of questing I. ricinus were found to be infected with Babesia spp. [17,44]. Relationships between the prevalence of infection with Babesia spp. of ticks and habitat type could be determined at several sites. Similar to our findings, a significantly higher proportion of Babesia-infected I. ricinus was found in a natural habitat than an urban area in Germany [40], but no Babesia spp. were found in I. ricinus from an urban habitat in the Czech Republic [42]. In contrast to I. ricinus, the overall prevalence of Babesia-infected H. concinna from our study was higher in the urban/ suburban habitat than in the natural habitat. We assume that the observed variations in the overall prevalence of infection with Babesia spp. between sites and tick species are associated with the vector competence of ticks for particular species of Babesia and the presence and abundance of competent reservoir hosts.
Babesia microti and B. venatorum as emerging zoonotic species and in some studies also B. divergens, have frequently been detected in questing I. ricinus in Europe [12, 17, 28, 38-40, 42, 43]. In previous reports from Slovakia, B. microti was the most common species detected in field-collected I. ricinus ticks [12,19]. Our results confirmed these observations. The parasite significantly prevailed in ticks from a natural habitat, as has been also reported in a study from Germany [40].
Phylogenetic analysis of partial 18S rRNA gene sequences from our study revealed their identity to those (See figure on previous page.) Fig. 2 Phylogenetic tree of hypervariable 18S rRNA gene sequences of Babesia and Theileria parasites using maximum likelihood. The sequence of each isolate is labelled with its gene accession number, isolate designation, host (questing tick, rodent-attached tick, and rodent), and geographic origin. The bootstrap values based on 1,000 replicates are displayed next to the branches. The tree is rooted using Cardiosporidium cionae as outgroup [1]. Wherever applicable, the number of identical sequences of a given isolate type is given. All clades marked by brackets display a highly significant bootstrap value (≥ 85). The evolutionary distance is shown in the units of the number of base substitutions per site of the zoonotic B. microti Jena/Germany genotype. Zoonotic B. microti genotypes have been found to be associated with microtine rodents and shrews [45,46]. In our study, B. microti was the only species detected in rodents and the same B. microti strain was also identified in questing and rodent-attached ticks. The overall prevalence of infection in rodents as reported by us is in accordance with previous findings from eastern Slovakia [12]. Prevalence of infection varying from 1.4 up to 27.2 % was reported for rodents from other European countries [17,45,[47][48][49][50][51].
Babesia microti-like piroplasmids were previously detected in small mammals from central Europe based on morphological studies of blood and tissue preparations. For example, a 0.4 % prevalence of infection was determined in bank voles (M. glareolus) in former Czechoslovakia [52]. Relatively low proportions of bank voles were found infected by applying molecular methods in the present study (0.4 %) as well as in eastern Slovakia (1.1 %) [12], although detection rates of blood parasites would be expected to be higher when using molecular methods rather than microscopic examinations [50]. In other central European countries, prevalence of infection with B. microti varied in bank voles from 0.0 to 4.9 % [17,50,51,53], whereas 6.1 to 15.9 % of bank voles were found to be infected in Slovenia and Croatia [45,49]. In the study at hand, the single B. microti-infected bank vole was positive for blood, but not infested by ticks. Parasite DNA was also detected in the skin of two other bank voles, suggesting local infections.
Previous studies on the yellow-necked mice (A. flavicollis) in central Europe reported a prevalence of B. microti infection ranging from 0 to 1.6 % [17,47,51,53] comparable to findings from eastern Slovakia [12] and also to our results. In contrast, higher percentages (11.8 to 16.2 %) of B. microti-infected mice were found in Slovenia and Croatia [45,49].
Voles of the genus Microtus are considered to be the main reservoirs of B. microti in natural foci of Europe. Prevalences of infection from 8.3 to 14.3 % were reported for the common vole (M. arvalis) from different European sites [47,51,53]. A high proportion of infected common voles (40.0 %) was also confirmed in our study whereas none or only 0.7 % of the common voles were found to be infected in other sites of Slovakia [12,52].
The presence of B. venatorum, a species recognized as a human pathogen [54], was confirmed in one third of Babesia-positive questing I. ricinus from our study. The occurrence of this parasite in questing ticks has been reported from a few sites of Slovakia only recently [13,55,56]. In contrast to B. microti infections, the proportion of ticks infected with B. venatorum did not differ between the two explored habitats. The roe deer, suggested to be the main reservoir host of this parasite species, [57] is present in both studied habitats. As transovarial transmission of B. venatorum has been demonstrated [58], it is probably also maintained in natural foci of Slovakia through its vector tick.
Babesia capreoli/B. divergens accounted for 2.6 % of the Babesia-positive I. ricinus ticks. The B. divergens-like hypervariable 18S rRNA gene region analyzed in our study showed identity with those of B. capreoli and B. divergens of which B. divergens has been demonstrated to be a zoonotic species [59]. Although cattle are considered the principal host of B. divergens, infections were also detected in deer assumed to function as reservoir host [60][61][62]. The presence of B. divergens in I. ricinus was noted once in Slovakia using the Reverse Line Blot Hybridization method [19]. In contrast, B. capreoli, a parasite of roe deer which differs marginally in the 18S rRNA gene sequence from B. divergens, is unable to infect humans [63]. To our knowledge, there are no published data on the presence of this species in Slovakia.
The presence of B. canis, the most frequent causative agent of canine babesiosis in central Europe, has previously been shown in D. reticulatus ticks of Slovakia [20] and also in blood samples from naturally infected dogs [21]. Importantly, we report here for the first time B. canis infection of I. ricinus from Slovakia. Thus, we confirm the previous conjecture of the infection of I. ricinus with B. canis as noted in a study from Poland [67,68]. However, our finding does not allow us to draw conclusions on the competence of I. ricinus as a vector of this parasite. We assume the B. canis DNA identified in I. ricinus ticks from the urban habitat may have originated from blood meals taken from infected dogs.
In the present study, B. microti-positive engorged I. ricinus ticks were sampled from infected rodents, but the parasite was also detected in a few larvae that fed on uninfected rodent specimens. Interestingly, we also found a few semi-engorged B. microti-positive I. ricinus females attached to rodents, however, it is uncertain if they can complete feeding on these hosts, as they generally prefer medium-sized to large mammalian hosts [69]. Babesia microti-positive I. ricinus larvae and nymphs were also found on rodents captured in eastern Slovakia [12] and Switzerland, where the pathogen was detected in xenodiagnostic ticks from infected bank voles [70]. In addition, we detected B. microti in a few H. concinna ticks feeding on infected rodents and in one larva collected from an uninfected yellow-necked mouse. There are no GenBank data on B. microti isolates from H. concinna and to the best of our knowledge, infection of this tick species by the parasite has not been reported. Babesia microti is thought to be incompetent for transovarial transmission in ticks [16,71] and the positivity of tick larvae might have resulted while feeding on infected hosts or co-feeding with infected ticks. Accordingly, we assume that the positive H. concinna larva collected from an uninfected yellownecked mouse acquired the infection via feeding on an infected host and, after interruption, subsequently attached to an uninfected rodent. Our results particularly underline the potential reservoir role of A. flavicollis and M. arvalis for B. microti at our study sites. In addition to B. microti, rodent-attached I. ricinus infected with B. venatorum and B. capreoli/B. divergens were found. As vertical transmission has been described for the latter two species of Babesia [7], we assume that these tick specimens acquired the infection from an infected female.
A number of Babesia spp. genetic variants that are closely related to small ruminant piroplasmids, Babesia crassa, Babesia cf. crassa, Babesia motasi, and to the cattleinfecting Babesia major have been found in H. concinna in Europe and Asia [1]. Babesia motasi is known as an agent of mild sheep and goat babesioses in various countries of Europe, Africa and Asia, while B. crassa and B. crassa-like piroplasmids have been detected in sheep blood in Iran and Turkey, and B. major in cattle from Europe and Asia [1]. In the inferred phylogenetic tree, Babesia spp. sequence variants identified in H. concinna from Slovakia clustered in two strongly supported monophyletic clades suggesting that each represents a novel species designated Babesia sp. 1 (Eurasia) and Babesia sp. 2 (Eurasia), respectively. Our results corroborate a wide distribution of these two novel piroplasmid species in H. concinna from Europe and Asia supporting recent findings [23,72]. Their presence across a large area may be related to the broad geographic distribution of H. concinna in Eurasia and connection of habitats via longitudinal migration of birds which are known to be preferred hosts of this tick species [14,15].
Piroplasmids of the genus Theileria found in H. concinna in the present study are known to infect a broad spectrum of free-ranging ungulates in neighbouring countries of Slovakia as well as in other regions of Europe [22,23,73]. The same or closely related strains of Theileria sp. were found in questing H. concinna from Austria [22], Hungary [23] and in rodent-attached and questing H. concinna from our study. The presence of Theileria sp. in H. concinna from Slovakia indicates that the tick species may be a suitable vector of species of Theileria in this region.
Detection of Hepatozoon spp. and Sarcocystis spp. DNA in rodents support former findings demonstrating that rodents are hosts of a large spectrum of apicomplexan parasites [17]. However, further molecular analyses of the isolates obtained during our study are necessary to reveal their identity with species of Hepatozoon and Sarcocystis.
Birds contribute to the geographic distribution of various tick-borne pathogens and serve as their hosts. Although there are no confirmed infections with Babesia spp. in birds from Europe, B. microti, B. venatorum, and B. divergens have been found in ticks infesting birds [71,[74][75][76]. The occurrence of Babesia spp. in ticks (especially in larvae) from birds suggested that birds may be able to infect ticks, at least in the case of B. microti, a species considered not to be transmitted transovarially. We did not find any Babesia-positive blood sample from birds and thus our results support previous findings that Babesia spp. associated with mammals do not infect birds [18]. Although studies on this topic are lacking, birds may act as carriers for Babesia-infected ticks contributing to the dispersal of the parasites in Europe [75,76].
Co-infections with other microorganisms were detected in less than 0.1 % of the examined Babesia-infected I. ricinus ticks. This result agrees with findings reported from other European countries on co-infection rates depending on the habitat and varying from 0.0 to 1.8 % for Babesia spp. and A. phagocytophilum [17,35,68,77] and from 0.02 to 1.8 % for Babesia spp. and CNM [78,79]. The low co-infection rate (0.05 %) for Babesia spp. (with B. microti prevailing) and A. phagocytophilum in ticks reported in this study is not surprising as the two microorganisms seem not to share the same reservoir hosts in the investigated area [26]. In contrast, B. microti and CNM have been found to be associated with rodents [16,32,45,46,78,80]. Accordingly, we would have expected to observe higher co-infection rates than determined in ticks (0.08 %) and rodents (0.83 %) in the context of this study. Generally, the microbiome of ticks was found to be very complex and rodents can carry a wide variety of microorganisms [81]. Information about the relationships (antagonism, mutualism) between particular microorganisms within the tick and the body of the vertebrate host as well as between microorganisms, ticks and the immune system of the reservoir host are scarce. We assume that the observed co-infection rates are the result of the complexity of the microorganismsvectorhost associations.

Conclusions
This study employed molecular tools to detect the presence of Babesia spp. in ticks, rodents, and birds from two contrasting habitat types in the Small Carpathian Mountains in south-western Slovakia. Different Babesia spp. were found to be distributed in the tick populations Eurasian blue tit (Cyanistes caeruleus) 6 Willow tit (Parus montanus) 5 Eurasian nuthatch (Sitta europaea) 9 Common chaffinch (Fringilla coelebs)