Strain | Origin | Year of isolation | Allele | |||||||
---|---|---|---|---|---|---|---|---|---|---|
 |  |  | gltA | groEL | lepA | lipA | lipB | secY | sodB | sucA |
Ball 3 | South Africa | NRa | 5 | 6 | 13 | 1 | 5 | 4 | 1 | 9 |
Burkina Faso | Burkina Faso | 1997 | 1 | 3 (4)b | 1 | 1 | 12 | 1 | 1 | 1 |
Crystal Springs | Zimbabwe | 1990 | 6 | 7 | 14 | 6 | 13 | 15 | 9 | 9 |
Gardel | Guadeloupe, Caribbean | 1982 | 1 | 1 | 3 | 1 | 4 | 1 | 1 | 2 |
Ifé Nigeria | Nigeria | 1983 | 7 | 3 (4) | 2 | 1 | 1 | 1 | 1 | 1 |
Kerr Seringe | The Gambia | 2001 | 3 | 5 | 1 | 3 | 6 (7)c | 16 | 3 | 5 |
Kiswani | Kenya | 1985 | 1 | 8 | 3 | 1 | 2 | 17 | 10 | 4 |
Kwanyanga | South Africa | NR | 8 | 3 (4) | 15 | 7 | 5 | 15 | 11 | 9 |
Lutale | Zambia | 1986 | 2 | 6 | 3 | 1 | 5 | 17 | 1 | 4 |
Pokoase 417 | Ghana | 1996 | 9 | 5 | 3 | 1 | 4 | 1 | 3 | 2 |
Sankat 430 | Ghana | 1996 | 3 | 5 | 1 | 3 | 6 (7) | 16 | 3 | 5 |
São Tomé | São Tomé and Principe | 1981 | 1 | 6 | 16 | 8 | 3 | 18 | 1 | 1 |
Senegal | Senegal | 1981 | 9 | 5 | 1 | 3 | 6 (7) | 19 | 3 | 5 |
Um Banein | Sudan | 1981 | 2 | 6 | 17 | 1 | 5 | 17 | 1 | 4 |
Welgevonden (Erwe) | South Africa | 1981 | 2 | 3 (4) | 2 | 1 | 5 | 1 | 1 | 4 |
Welgevonden (Erwo) | South Africa | 1985 | 2 | 3 (4) | 2 | 1 | 5 | 4 | 1 | 4 |
Zeerust | South Africa | 1979 | 10 | 6 | 18 | 1 | 13 | 15 | 1 | 10 |
A. variegatum samples from Uganda | Â | Â | Â | Â | Â | Â | Â | Â | ||
A004 | Amuria, Uganda | 2008-2009 | 1 | 9 | 17 | 1 | 1 | 1 | 1 | 4 |
A006 | Amuria, Uganda | 2008-2009 | 1 | 9 | 17 | 1 | 1 | 1 | 1 | 4 |
D002 | Dokolo, Uganda | 2008-2009 | 2 | 3 (4) | 3 | 1 | 8 | 17 | 1 | 4 |
P003 | Pallisa, Uganda | 2008-2009 | 1 | 3 (4) | 17 | 1 | 3 | 17 | 1 | 4 |
P006 | Pallisa, Uganda | 2008-2009 | 2 | 3 (4) | 3 | 1 | 8 | 17 | 1 | 4 |
S001 | Soroti, Uganda | 2008-2009 | 2 | 3 (4) | 3 | 1 | 8 | 1 | 1 | 4 |
S013 | Soroti, Uganda | 2008-2009 | 1 | 6 | 2 | 1 | 1 | 1 | 1 | 1 |
T009 | Tororo, Uganda | 2008-2009 | 1 | 9 | 17 | 1 | 1 | 1 | 1 | 4 |
No. of alleles | Â | Â | 9 | 7 | 9 | 5 | 9 | 7 | 5 | 6 |
No. of mutated sites per locus | Â | Â | 15 | 11 | 10 | 11 | 13 | 24 | 7 | 12 |
Size (bp) | Â | Â | 395 | 447 | 475 | 341 | 358 | 587 | 415 | 401 |
Polymorphism (%) | Â | Â | 3.80 | 2.46 | 2.11 | 3.23 | 3.63 | 4.09 | 1.69 | 2.99 |
DId | Â | Â | 80.3 | 80.0 | 85.7 | 42.0 | 88.7 | 78.3 | 47.0 | 73.7 |
dN/dSe | Â | Â | 0.36 | 0.22 | 0.43 | 0.22 | 0.30 | 0.14 | 0.40 | 0.33 |