From: Genetic interrelationships of North American populations of giant liver fluke Fascioloides magna
Country/province, state | cox1 haplotype code | GenBank Acc. no. | No. of specimens | nad1 haplotype code | GenBank Acc. no. | No. of specimens |
---|---|---|---|---|---|---|
CO1-Ha freq. - % | ND1-Ha freq. - % | |||||
Canada/Alberta (AB) | CO1-Ha1/AB | GU599861a | 95 → 38.3 (Ha1) | ND1-Ha3/AB | GU599845a | 90 → 39.6 (Ha3) |
CO1-Ha6/AB | GU599871a | 26 → 10.5 (Ha6) | ND1-Ha8/AB | GU599846a | 11 → 4.8 (Ha8) | |
Canada/British | CO1-Ha1/BC | KP635011 | ND1-Ha3/BC | KP635037 | ||
Columbia (BC) | CO1-Ha20/BC | KP635012 | 3 → 1.2 (Ha20) | ND1-Ha24/BC | KP635038 | 6 → 2.6 (Ha24) |
CO1-Ha21/BC | KP635013 | 5 → 2.0 (Ha21) | ND1-Ha25/BC | KP635039 | 3 → 1.3 (Ha25) | |
ND1-Ha30/BC | KP635040 | 1 → 0.4 (Ha30) | ||||
Canada/Northern | CO1-Ha9/NL/QC | KP635014, KP635017 | 14 → 5.6 (Ha9) | ND1-Ha12/QC | KP635041 | 11 → 4.8 (Ha12) |
Quebec (QC) and | CO1-Ha17NL/QC | KP635015, KP635018 | 10 → 4.0 (Ha17) | ND1-Ha19/QC/NL | KP635042, KP635047 | 25 → 11.0 (Ha19) |
Labrador (NL) | CO1-Ha18/NL | KP635016 | 1 → 0.4 (Ha18) | ND1-Ha20/QC/NL | KP635043, KP635048 | 6 → 2.6 (Ha20) |
CO1-Ha22/QC | KP635019 | 5 → 2.0 (Ha22) | ND1-Ha21/QC | KP635044 | 2 → 0.9 (Ha21) | |
CO1-Ha28/QC | KP635020 | 2 → 0.8 (Ha28) | ND1-Ha22/QC/NL | KP635045, KP635049 | 4 → 1.8 (Ha22) | |
ND1-Ha23/QC | KP635046 | 1 → 0.4 (Ha23) | ||||
USA/Oregon (OR) | CO1-Ha1/OR | GU599862a | ND1-Ha3/OR | GU599848a | ||
USA/Minnesota (MN) | CO1-Ha8/MN | GU599873a | 13 → 5.2 (Ha8) | ND1-Ha9/MN | GU599849a | 7 → 3.1 (Ha9) |
CO1-Ha9/MN | GU599874a | ND1-Ha10/MN | GU599850a | 12 → 5.3 (Ha10) | ||
CO1-Ha10/MN | GU599875a | 4 → 1.6 (Ha10) | ND1-Ha11/MN | GU599851a | 2 → 0.9 (Ha11) | |
CO1-Ha11/MN | GU599876a | 3 → 1.2 (Ha11) | ND1-Ha12/MN | GU599852a | ||
CO1-Ha19/MN | KP635021 | 1 → 0.4 (Ha19) | ND1-Ha32/MN | KP635050 | 1 → 0.4 (Ha32) | |
USA/Mississippi (MS) | CO1-Ha9/MS | KP635022 | ND1-Ha12/MS | KP635051 | ||
CO1-Ha12/MS | GU599877a | 2 → 0.8 (Ha12) | ND1-Ha15/MS | GU599855a | 2 → 0.9 (Ha15) | |
CO1-Ha13/MS | GU599878a | 1 → 0.4 (Ha13) | ND1-Ha16/MS | GU599856a | 2 → 0.9 (Ha16) | |
CO1-Ha14/MS | GU599879a | 1 → 0.4 (Ha14) | ND1-Ha17/MS | GU599857a | 5 → 2.2 (Ha17) | |
CO1-Ha15/MS | GU599880a | 3 → 1.2 (Ha15) | ||||
USA/Florida (FL) | CO1-Ha16/FL | GU599882a | 22 → 8.9 (Ha16) | ND1-Ha13/FL | GU599853a | 15 → 6.6 (Ha13) |
ND1-Ha14/FL | GU599854a | 2 → 0.9 (Ha14) | ||||
ND1-Ha27/FL | KP635052 | 3 → 1.3 (Ha27) | ||||
ND1-Ha28/FL | KP635053 | 2 → 0.9 (Ha28) | ||||
USA/Georgia (GA) | CO1-Ha7/GA | GU599872a | 1 → 0.4 (Ha7) | ND1-Ha9/GA | GU599847a | |
CO1-Ha16/GA | KP635023 | ND1-Ha13/GA | KP635054 | |||
USA/Louisiana (LA) | CO1-Ha15/LA | GU599881a | ND1-Ha10/LA | KP635055 | ||
CO1-Ha29/LA | KP635024 | 1 → 0.4 (Ha29) | ND1-Ha12/LA | KP635056 | ||
CO1-Ha30/LA | KP635025 | 1 → 0.4 (Ha30) | ND1-Ha16/LA | GU599858a | ||
CO1-Ha31/LA | KP635026 | 1 → 0.4 (Ha31) | ND1-Ha17/LA | KP635057 | ||
CO1-Ha32/LA | KP635027 | 1 → 0.4 (Ha32) | ND1-Ha18/LA | GU599859a | 2 → 0.9 (Ha18) | |
CO1-Ha33/LA | KP635028 | 2 → 0.8 (Ha33) | ||||
CO1-Ha34/LA | KP635029 | 1 → 0.4 (Ha34) | ||||
USA/South Carolina (SC) | CO1-Ha3/SC | KP635030 | 7 → 2.8 (Ha3) | ND1-Ha4/SC | KP635058 | 2 → 0.9 (Ha4) |
CO1-Ha23/SC | KP635031 | 16 → 6.5 (Ha23) | ND1-Ha6/SC | KP635059 | 5 → 2.2 (Ha6) | |
CO1-Ha24/SC | KP635032 | 1 → 0.4 (Ha24) | ND1-Ha19/SC | KP635060 | ||
CO1-Ha25/SC | KP635033 | 1 → 0.4 (Ha25) | ND1-Ha26/SC | KP635061 | 1 → 0.4 (Ha26) | |
CO1-Ha26/SC | KP635034 | 1 → 0.4 (Ha26) | ND1-Ha29/SC | KP635062 | 3 → 1.3 (Ha29) | |
CO1-Ha27/SC | KP635035 | 2 → 0.8 (Ha27) | ND1-Ha31/SC | KP635063 | 1 → 0.4 (Ha31) | |
CO1-Ha35/SC | KP635036 | 1 → 0.4 (Ha35) |