Table 2 Comparison of Raillietina sp. mt1 and mt2 sequences with Raillietina tetragona and Hymenolepis diminuta based on nucleotide sequence identity (%) of PCGs, NCR, and rRNA
From: Heteroplasmic mitochondrial genomes of a Raillietina tapeworm in wild Pangolin
Gene | Gene length (bp) | Sequence identity (%) | |||||
|---|---|---|---|---|---|---|---|
mt1* 14331 | mt2 14341 | RT 14444 | HD 13708 | mt1*/mt2 | mt1*/RT | mt1*/HD | |
cox1 | 1644 | 1644 | 1617 | 1593 | 95.8 | 81.7 | 75.1 |
cox2 | 570 | 570 | 573 | 579 | 96.3 | 79.7 | 71.3 |
nad6 | 459 | 459 | 456 | 459 | 93.2 | 70.5 | 62.7 |
nad5 | 1575 | 1575 | 1581 | 1575 | 94.9 | 71.0 | 64.0 |
cox3 | 645 | 645 | 648 | 651 | 95.6 | 74.3 | 62.3 |
cytb | 1113 | 1113 | 1092 | 1098 | 95.2 | 79.8 | 67.2 |
nad4L | 261 | 261 | 270 | 261 | 95.0 | 70.7 | 72.7 |
nad4 | 1254 | 1254 | 1251 | 1248 | 93.7 | 75.3 | 65.0 |
atp6 | 507 | 507 | 507 | 516 | 95.4 | 74.1 | 65.6 |
nad2 | 879 | 879 | 738 | 882 | 96.1 | 66.6 | 67.9 |
nad1 | 891 | 891 | 891 | 891 | 94.3 | 78.1 | 74.4 |
nad3 | 348 | 348 | 348 | 348 | 97.1 | 79.3 | 68.3 |
NCR1 | 184 | 184 | 178 | 185 | 94.5 | 31.6 | 19.5 |
NCR2 | 589 | 589 | 728 | 261 | 100.0 | 27.6 | 16.1 |
rrnL | 978 | 978 | 971 | 967 | 96.9 | 79.3 | 66.8 |
rrnS | 730 | 730 | 699 | 715 | 97.5 | 80.2 | 73.8 |
Total identity | 95.6 | 74.5 | 71.7 | ||||