A genotyping array for the globally invasive vector mosquito, Aedes albopictus

Parasites & Vectors

Table 1 Summary of the SNP mismatch percentage (zygosity) for individuals from two populations (KAT and SAI)

Population	Sample ID	ab	ac	bc	yx	yw	xw	ay	bx	cw
KAT	7	0.91	1.00	0.30	1.28	2.51	2.61	5.51	4.72	4.60
KAT	8	1.01	1.09	0.31	1.27	2.52	2.66	5.96	5.13	4.94
KAT	9	0.87	0.95	0.26	1.09	2.03	2.15	5.07	4.27	4.19
KAT	10	0.88	0.99	0.31	1.31	2.63	2.74	5.52	4.78	4.63
KAT	11	1.00	1.12	0.32	1.19	2.39	2.48	6.30	5.43	5.25
KAT	12	1.01	1.12	0.31	1.31	2.54	2.68	5.32	4.36	4.17
KAT mean		0.95	1.05	0.30	1.24	2.44	2.55	5.61	4.78	4.63
SAI	1	1.41	1.55	0.49	0.97	2.27	2.30	9.03	7.83	7.34
SAI	2	1.29	1.50	0.49	1.08	2.61	2.65	9.00	7.91	7.39
SAI	3	1.15	1.34	0.44	1.83	4.31	4.42	9.74	8.79	8.12
SAI	4	1.42	1.59	0.50	1.94	4.51	4.62	10.37	9.43	8.69
SAI	5	1.17	1.30	0.41	2.30	5.37	5.56	10.90	10.00	9.20
SAI	12	1.23	1.36	0.42	0.87	1.99	2.06	8.43	7.31	6.86
SAI	13	1.23	1.38	0.47	1.57	3.60	3.70	9.48	8.46	7.93
SAI	14	1.43	1.56	0.50	1.20	2.85	2.90	9.62	8.43	7.80
SAI	15	1.20	1.32	0.44	0.58	1.38	1.42	8.31	7.32	6.83
SAI	16	1.21	1.42	0.45	1.07	2.40	2.44	8.24	7.12	6.65
SAI	17	1.19	1.34	0.42	1.86	4.33	4.46	9.64	8.69	8.10
SAI	18	1.23	1.38	0.46	1.54	3.65	3.77	9.48	8.51	7.86
SAI mean		1.42	0.46	1.40	3.36	3.27	3.36	9.35	8.31	7.73
Overall mean		1.16	1.30	0.41	1.35	2.99	3.09	8.11	7.14	6.70

Two types of pairwise comparisons are presented: (1) the same methodology (WGS or SNP chip) but between datasets with different sample sizes (datasets a, b, and c for the SNP chip data and y, x and w for the WGS data; Additional file 25: Fig. S2), and (2) between methodologies (ay, bx, cw). The second column lists the individuals within each population, numbered by population. The following columns report the percent mismatches within and between datasets for that individual. “Mean” refers to the mean values per population. “Overall mean” refers to the mean for all the samples (last line)

ISSN: 1756-3305