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Table 3 Pairwise concordance analysis for technical replicates genotyped using the SNP chip

From: A genotyping array for the globally invasive vector mosquito, Aedes albopictus

Technical replicate 1

Technical replicate 2

Concordance (%)

1a

1b

99.52

1a

1c

99.31

1b

1c

99.67

2a

2b

98.46

2a

2c

99.33

2b

2c

98.40

3a

3b

99.59

3a

3c

99.59

3b

3c

99.53

4a

4b

99.61

4a

4c

99.52

4b

4c

99.41

Mean

 

99.32

 

Random samples

 

1a

2b

52.33

3c

2a

50.86

1a

4a

54.43

3b

1a

53.33

Mean

 

52.74

Replicate

Mean error rate per replicate (%)

1

0.50

2

1.27

3

0.43

4

0.49

Mean

0.67

  1. The first two columns list the two replicates. The third column shows the percent of times two replicates shared identical genotypes or the average error rate per replicate. “Random samples” refers to the percentage of times two randomly picked individuals share identical genotypes but are not technical replicates. The names of the genotyping files are described in Additional file 26: Table S5
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Parasites & Vectors

ISSN: 1756-3305

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