Table 3 Base composition and skewness of Rhabdias kafunata and Rhabdias bufonis
Location/species | Total | A (%) | T (%) | C (%) | G (%) | A + T (%) | AT skew | GC skew |
|---|---|---|---|---|---|---|---|---|
Rhabdias kafunata | ||||||||
Complete mitochondrial genome | 15,437 | 28.7 | 47.2 | 7.8 | 16.5 | 75.8 | −0.24 | 0.36 |
Protein coding genes (PCGs) | 10,327 | 25.7 | 49.8 | 7.6 | 16.9 | 75.5 | −0.32 | 0.38 |
Codon position | ||||||||
First codon | 3442 | 30.4 | 41.5 | 7.1 | 21.0 | 71.9 | −0.15 | 0.49 |
Second codon | 3442 | 19.2 | 51.1 | 12.8 | 16.9 | 70.3 | −0.45 | 0.14 |
Third codon | 3442 | 27.6 | 56.8 | 2.9 | 12.7 | 84.4 | −0.35 | 0.62 |
tRNAs | 1238 | 35.1 | 39.7 | 8.2 | 17.0 | 74.8 | −0.06 | 0.35 |
rRNAs | 1696 | 35.7 | 41.3 | 7.4 | 15.6 | 77.0 | −0.07 | 0.36 |
rrnL | 993 | 35.6 | 43.7 | 6.1 | 14.6 | 79.3 | −0.10 | 0.41 |
rrnS | 703 | 35.9 | 38.0 | 9.1 | 17.1 | 73.8 | −0.03 | 0.30 |
Non-coding region 1 | 253 | 36.4 | 45.8 | 5.1 | 12.6 | 82.2 | −0.11 | 0.42 |
Non-coding region 2 | 204 | 28.9 | 25.5 | 21.6 | 24.0 | 54.4 | 0.06 | 0.05 |
Non-coding region 3 | 214 | 38.3 | 45.8 | 3.7 | 12.1 | 84.1 | −0.09 | 0.53 |
Non-coding region 4 | 747 | 37.9 | 39.2 | 9.8 | 13.1 | 77.1 | −0.02 | 0.14 |
Non-coding region 5 | 456 | 27.2 | 51.5 | 6.8 | 14.5 | 78.7 | −0.31 | 0.36 |
Non-coding region 6 | 139 | 25.2 | 46.0 | 10.1 | 18.7 | 71.2 | −0.29 | 0.30 |
Rhabdias bufonis | ||||||||
Whole mitochondrial genome | 15,128 | 28.5 | 48.2 | 7.4 | 15.9 | 76.7 | −0.26 | 0.36 |
Protein coding genes (PCGs) | 10,246 | 25.7 | 50.5 | 7.4 | 16.3 | 76.2 | −0.32 | 0.37 |
Codon position | ||||||||
First codon | 3415 | 29.9 | 41.9 | 7.1 | 21.2 | 71.8 | −0.17 | 0.50 |
Second codon | 3415 | 19.2 | 51.1 | 12.9 | 16.8 | 70.2 | −0.45 | 0.13 |
Third codon | 3415 | 28.1 | 58.5 | 2.3 | 11.0 | 86.6 | −0.35 | 0.65 |
tRNAs | 1241 | 34.1 | 40.1 | 8.5 | 17.2 | 74.2 | −0.08 | 0.34 |
rRNAs | 1686 | 35.0 | 41.3 | 7.7 | 16.0 | 76.3 | −0.08 | 0.35 |
rrnL | 984 | 34.1 | 43.9 | 6.7 | 15.2 | 78.0 | −0.13 | 0.39 |
rrnS | 702 | 36.2 | 37.7 | 9.0 | 17.1 | 73.9 | −0.02 | 0.31 |
Non-coding region 1 | 596 | 31.0 | 45.6 | 9.2 | 14.1 | 76.7 | −0.19 | 0.21 |
Non-coding region 2 | 471 | 44.8 | 45.2 | 4.5 | 5.5 | 90.0 | 0.00 | 0.10 |
Non-coding region 3 | 476 | 27.7 | 51.9 | 4.8 | 15.5 | 79.6 | −0.30 | 0.53 |
Non-coding region 4 | 156 | 29.5 | 47.4 | 8.3 | 14.7 | 76.9 | −0.23 | 0.28 |