Table 5 Significant eQTL between SNP variants and differentially expressed transcripts (DET) upregulated in H. contortus-resistant or H. contortus-susceptible Morada Nova sheep

OAR11_27473453.1 and s08310.1 (MED11 and intergenic—Chr11)

XM_042241996.1 (TMEM187—ChrX)

Susceptible

NC_056071.1:46893094_C/A (TRAPPC6B—Chr18)

XM_042256817.1 (RORC—Chr1), XM_042243310.1 (LOC121818624—Chr2), XM_027967527.2 (DTX3—Chr3), XM_042249264.1 (AGAP3—Chr4), XM_027970457.2 (THG1L—Chr5), XM_042252750.1 (PTGR2—Chr7), XM_042255599.1 (CHRNE—Chr11), XM_042230308.1 (CDC123—Chr13), XR_006056188.1 (LOC101122718—Chr14), XM_042234867.1 (C17H22orf15—Chr17), XM_042237011.1 (BRD2—Chr20), XR_003586743.2 (KDSR—Chr23), XM_042240704.1 and XM_042240703.1 (TECPR1—Chr24)

Resistant

XM_015092088.3 (LRRC8B—Chr1), XM_042251691.1 (HGFAC—Chr6), XM_015097958.3 (FGF14—Chr10), XM_027977036.2 (FAM110A—Chr13), XM_042234479.1 and XM_042234478.1 (EP400—Chr17), XM_004021043.5 (ZNF789—Chr24), XR_003587432.2 (LOC114111361—ChrX), XR_006058459.1 (LOC121818463—unknown)

Susceptible

NC_056077.1:4352395_C/A and NC_056077.1:4352403_C/T (MGRN1—Chr24)

XM_042234385.1 (RAPGEF2—Chr17)

Resistant

NC_056079.1:6981437_A/G (SPCS3—Chr26)

XM_015097958.3 (FGF14—Chr10)

Susceptible