Sequence analysis of the 3’-untranslated region of HSP70 (type I) genes in the genus Leishmania: its usefulness as a molecular marker for species identification

Requena, Jose M; Chicharro, Carmen; García, Lineth; Parrado, Rudy; Puerta, Concepción J; Cañavate, Carmen

doi:10.1186/1756-3305-5-87

Table 1 Reference strains and sequences used in this study

From: Sequence analysis of the 3’-untranslated region of HSP70 (type I) genes in the genus Leishmania: its usefulness as a molecular marker for species identification

Species	WHO code	Origin	Sequence ID	Size (bp)	Label^a
L. aethiopica	MHOM/ET/82/101-82	Ethiopia	HE575325^b	696^e	Lae-101
L. aethiopica	MHOM/ET/82/652-82	Ethiopia	HE575326^b	701	Lae-652
L. aethiopica	MHOM/ET/72/L100	Ethiopia	HE575327^b	700	Lae-L100
L. amazonensis	MHOM/BR/77/LTB0016/C1S1	Brazil	L14605^c	703^e	Lam-LBT
L. amazonensis	IFLA/BR/67/PH8	Brazil	HE575328^b	700	Lam-PH8
L. braziliensis	MHOM/BR/75/M2904	Brazil	Contig LbrM28_V2_October (1081948–1082464, minus strand)^d	517^e	Lb-M2904
L. braziliensis	MHOM/BO/00/CUM45	Bolivia	HE575329^b	518	Lb-CUM45
L. donovani	MHOM/IN/80/DD8	India	HE575330^b	718	Ld-DD8
L. donovani	MHOM/IN/00/DEVI	India	HE575331^b	724	Ld-DEVI
L. donovani	MHOM/ET/67/HU3	Ethiopia	HE575332^b	711^e	Ld-HU3
L. donovani	IMRT/KE/62/LRC-L57	Kenya	HE575333^b	715	Ld-LCR
L. guyanensis	MHOM/PE/91/LC1446	Peru	HE575334^b	585^e	Lg-LC1446
L. infantum	MCAN/ES/98/LLM-877 (JPCM5)	Spain	Contig LinJ28_20070420_V3 (1094043–1094771, minus strand)^d	729^e	Li-JPCM5
L. infantum	MHOM/FR/78/LEM-75	France	HE575335^b	731	Li-LEM75
L. infantum	MCAN/ES/01/LLM-1050	Spain	HE575336^b	733	Li-LLM1050
L. infantum	MHOM/ES/05/LLM-1525	Spain	HE575337^b	731	Li-LLM1525
L. lainsoni	MHOM/BO/95/CUM71	Bolivia	HE575338^b	589^e	Ll-CUM71
L. major	MHOM/IL/80/Friedlin	Israel	LmjF28_01_20050601_V5.2 (1059883–1060597, minus strand)^d	715^e	Lmj-Friedlin
L. major	MRHO/SU/59/P-STRAIN	Former Soviet Union	HE575339^b	715	Lmj-P-STRAIN
L. major	MHOM/SU/73/5-ASKH	Former Soviet Union	HE575340^b	718	Lmj-5-ASKH
L. panamensis	MHOM/COL/81/L13	Colombia	LpnLscaffold351 (149539–150125, minus strand)^f	587	Lpa-L13
L. peruviana	MHOM/PE/90/LH249	Peru	HE575341^b	516^e	Lp-LH249
L. tropica	MRAT/IQ/72/ADHANIS1	Iraq	HE575342^b	704^e	Lt-ADHANIS1
L. tropica	MHOM/SU/74/K27	Former Soviet Union	HE575343^b	702	Lt-K27

^aLabel for strain identification in Figure 3.
^bNew sequences submitted to EMBL-EBI database.
^cGenBank accession number.
^dGeneDB identificator.
^eSequences depicted in Figure 2.
^fTriTrypDB identificator (http://www.tritrypdb.org).

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ISSN: 1756-3305

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