Table 2 Assessment of cut-off levels for the presence-absence of AFLP fragments
From: Population genetic structure of Ascaridia galli re-emerging in non-caged laying hens
Samples | Cut off (U) | |||||
|---|---|---|---|---|---|---|
50 | 60 | 70 | 80 | 90 | 100 | |
Differences among replicates | ||||||
Four replicates | 20 | 11 | 10 | 5 | 5 | 5 |
Two replicates | 12 | 7 | 5 | 5 | 4 | 2 |
Jönköping farm | ||||||
Total no. peaks | 101 | 88 | 77 | 68 | 60 | 55 |
Variable peaks | 78 | 65 | 54 | 46 | 39 | 35 |
Re-allocation success (%) | 17.9 | 30.4 | 33.9 | 30.4 | 21.4 | 21.4 |
All farms | ||||||
Total no. peaks | 128 | 109 | 102 | 97 | 91 | 86 |
Variable peaks | 106 | 88 | 82 | 79 | 74 | 69 |
Re-allocation success (%) | 82.8 | 79.8 | 81.8 | 86.9 | 76.8 | 76.8 |