Genetic differentiation between sandfly populations of Phlebotomus chinensis and Phlebotomus sichuanensis (Diptera: Psychodidae) in China inferred by microsatellites

Zhang, Li; Ma, Yajun; Xu, Jiannong

doi:10.1186/1756-3305-6-115

Table 2 Summary of microsatellite variation at 10 loci in this study

From: Genetic differentiation between sandfly populations of Phlebotomus chinensis and Phlebotomus sichuanensis (Diptera: Psychodidae) in China inferred by microsatellites

Samples		GA1	GA5	GA13	GA24	GA63	GA76	GA109	AAT3	HN54	TG1	All loci
SXL (N = 26)	A	2	5	8	6	6	11	6	5	3	3	5.500
	R _S	1.400	3.341	4.765	3.656	3.726	4.540	3.389	3.176	1.918	1.622	3.153
	H _E	0.108	0.694	0.836	0.736	0.724	0.782	0.701	0.614	0.298	0.160	0.565
	H _O	0.000	0.539	0.500	0.423	0.286	0.400	0.692	0.400	0.346	0.167	0.375
	r	0.095	0.085	0.176	0.136	0.247	0.203	0.000	0.126	0.654	0.000	0.181
	F _IS	1.000	0.227	0.406	0.430*	0.611*	0.497*	0.012*	0.353*	-0.166	-0.041	0.342
SXX (N = 25)	A	5	5	8	6	5	13	5	5	2	5	5.900
	R _S	2.875	3.005	4.632	3.711	2.993	5.450	3.369	3.179	1.857	1.950	3.302
	H _E	0.482	0.632	0.809	0.746	0.637	0.868	0.698	0.657	0.327	0.235	0.609
	H _O	0.357	0.440	0.696	0.600	0.267	0.684	0.640	0.520	0.400	0.167	0.477
	r	0.073	0.111	0.053	0.033	0.216	0.087	0.003	0.075	0.600	0.052	0.132
	F _IS	0.266	0.308	0.143	0.199	0.590	0.216	0.085*	0.212	-0.231	0.295	0.221
HNS (N = 27)	A	8	6	6	5	9	13	7	6	3	8	7.100
	R _S	3.230	3.366	4.178	3.615	5.014	5.556	3.411	3.889	1.918	4.317	3.849
	H _E	0.516	0.667	0.776	0.736	0.854	0.873	0.708	0.721	0.298	0.777	0.693
	H _O	0.444	0.440	0.522	0.478	0.389	0.739	0.704	0.667	0.346	0.300	0.503
	r	0.038	0.129	0.135	0.119	0.241	0.062	0.000	0.000	0.654	0.260	0.167
	F _IS	0.142	0.345	0.332	0.356	0.552*	0.156	0.006*	0.077*	-0.166	0.620*	0.279
GSZ (N = 26)	A	1	4	9	7	6	9	7	7	2	6	5.800
	R _S	1.000	2.900	5.054	4.121	4.001	4.469	3.596	4.560	1.870	3.669	3.524
	H _E	0.000	0.618	0.855	0.781	0.772	0.759	0.706	0.819	0.337	0.717	0.636
	H _O	0.000	0.333	0.462	0.692	0.250	0.467	0.920	0.381	0.417	0.412	0.433
	r	NA	0.169	0.233	0.000	0.287	0.154	0.000	0.233	0.583	0.167	0.203
	F _IS	NA	0.466	0.465*	0.116	0.682*	0.393*	-0.310*	0.541*	-0.243	0.433*	0.282
SCJ (N = 28)	A	7	4	7	9	9	5	9	5	2	6	6.300
	R _S	3.130	2.649	3.913	3.899	4.368	5.000	3.490	2.891	1.857	3.216	3.441
	H _E	0.540	0.474	0.736	0.728	0.775	0.893	0.694	0.542	0.308	0.690	0.638
	H _O	0.214	0.440	0.393	0.500	0.482	0.250	0.929	0.360	0.370	0.364	0.430
	r	0.281	0.017	0.192	0.125	0.194	0.200	0.000	0.112	0.630	0.164	0.191
	F _IS	0.511*	0.051	0.423*	0.332	0.394*	0.750	-0.344*	0.321	-0.231	0.550*	0.328
SCD (N = 26)	A	9	7	8	5	6	8	4	5	2	2	5.600
	R _S	4.553	3.228	3.991	2.631	2.839	4.764	2.849	3.051	1.268	2.279	3.145
	H _E	0.705	0.548	0.652	0.420	0.426	0.761	0.490	0.458	0.071	0.374	0.490
	H _O	0.692	0.720	0.667	0.500	0.308	0.546	0.720	0.320	0.000	0.000	0.447
	r	0.022	0.000	0.019	0.000	0.104	0.136	0.000	0.111	0.981	0.332	0.171
	F _IS	0.217	-0.059	0.182	-0.007	0.390	0.351	-0.295	0.467*	1.000	0.871*	0.244
All samples (N = 158)	A	5.330	5.170	7.670	6.330	6.830	9.830	6.330	5.500	2.300	5.170	6.046
	R _S	2.801	3.398	5.107	3.688	4.006	5.851	3.466	3.720	2.005	3.166	3.721
	H _E	0.394	0.624	0.792	0.707	0.7160	0.833	0.680	0.656	0.276	0.515	0.619
	H _O	0.275	0.483	0.536	0.533	0.332	0.514	0.770	0.441	0.318	0.236	0.447
	r	0.102	0.085	0.135	0.069	0.215	0.140	0.001	0.109	0.684	0.162	0.174
	F _IS	1.618	1.723	2.492	1.959	2.097	2.988	1.945	1.860	0.983	1.660	1.932

First column indicates collection sites and sample size in parenthesis; A, number of alleles; R_S, allelic richness; H_E, expected heterozygosity; H_O, observed heterozygosity; r: frequency of null alleles; F_IS, inbreeding coefficient; All loci/samples, mean values over loci or populations; NA, no data; *, Probability test against Hardy- Weinberg proportions (P < 0.001).

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ISSN: 1756-3305

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