Table 6 Nucleotide homologies of partial 56-kDa TSA gene between Orientia tsutsugamushi strains
Reference strain | Homologies (%) | |||||||
|---|---|---|---|---|---|---|---|---|
| Â | TAM1 | TAM2 | TAM3 | TAM5 | YNM1 | YNM2 | YNM5 | TAT1 |
Kawasaki | 69.8 | 96.4 | 96.4 | 96.5 | 96.5 | 96.5 | 96.5 | 96.5 |
Shimokoshi | 99.4 | 70.4 | 70.4 | 70.4 | 70.4 | 70.4 | 70.4 | 70.4 |
Shandong-XDM2 | 71.2 | 99.9 | 99.9 | 100 | 100 | 100 | 100 | 100 |
CHL | 70.7 | 99.9 | 99.9 | 100 | 100 | 100 | 100 | 100 |
ZQL | 70.5 | 99.9 | 99.9 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 |
ZZF | 70.7 | 100 | 100 | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 |
TADY12-0305 | 70.3 | 99.6 | 99.6 | 99.4 | 99.4 | 99.4 | 99.4 | 99.4 |
TADY12-0307 | 70.4 | 99.6 | 99.6 | 99.4 | 99.4 | 99.4 | 99.4 | 99.4 |
YN11-24 | 70.5 | 99.9 | 99.9 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 |
TAXT11-1023 | 70.7 | 100 | 100 | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 |
STAD10-24 | 70.7 | 100 | 100 | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 |
STAD10-792 | 69.6 | 76.4 | 76.4 | 76.4 | 76.4 | 76.4 | 76.4 | 76.4 |
TAXT11-1103 | 69.6 | 76.4 | 76.4 | 76.4 | 76.4 | 76.4 | 76.4 | 76.4 |
TADY11-1168 | 75.7 | 70.0 | 70.0 | 70.0 | 70.0 | 70.0 | 70.0 | 70.0 |