Table 5 Outcome of Blast hit comparison in determining the identity of amplified sequences
Sample ID | ompB | BLAST hit | 17 kDa | BLAST hit | gltA | BLAST hit | ompA | BLAST hit |
|---|---|---|---|---|---|---|---|---|
84154 | 219/222 | Candidatus R. amblyommii [CP003334/JN378402] | nd | nd | nd | |||
R. helvetica [HQ232249/HQ232247] | ||||||||
R. amblyommii [AF479763] | ||||||||
Uncultured Rickettsia sp. clone CsfC2 [EU407140] | ||||||||
84594 | 424/431 | Rickettsia sp. T170-B [JQ727680] | 394/394 | R. raoultii | nd | nd | ||
R. heilongjiangensis [CP002912/AY280712]* | Rickettsia sp. RpA4 | |||||||
Rickettsia sp. IG-1 [EF219461] | Rickettsia sp. ARANHA | |||||||
Candidatus R. gravesii | ||||||||
84607 | 428/431 | R. slovaca [CP003375/CP002428]* | 392/392 | Candidatus R. antechini [DQ372953] | nd | nd | ||
R. parkeri [CP003341/FJ644549]* | 392/394 | R. rickettsii [KC845924/CP003311]* | ||||||
R. sibirica [HM050273/AF123722] | R. parkeri [CP003341/EF689732]* | |||||||
R. conorii [AE006914/AF123726]* | R. philipii [CP003308] | |||||||
Rickettsia sp. BJ-90 [AY331393] | R. peacockii [CP001227/AF260571]* | |||||||
Rickettsia sp. NOD [EU567178] | ||||||||
84609 | 220/222 | R. slovaca [CP003375/CP002428]* | 392/392 | Candidatus R. antechini [DQ372953] | nd | nd | ||
R. parkeri [CP003341/FJ644549]* | 392/394 | R. rickettsii [KC845924/CP003311]* | ||||||
R. rickettsii [CP003311] | R. parkeri [CP003341/EF689732]* | |||||||
R. philipii [CP003308] | R. philipii [CP003308] | |||||||
R. sibirica [HM050273/AF123722] | R. peacockii [CP001227/AF260571]* | |||||||
R. conorii [AE006914/AF123726]* | Rickettsia sp. NOD [EU567178] | |||||||
R. mongolotimonae [DQ097083/AF123715] | ||||||||
Rickettsia sp. BJ-90 [AY331393] | ||||||||
Uncultured Rickettsia sp. clone B3[DQ019321] | ||||||||
84748 | 185/187 | Candidatus R. hoogstraalii [EF629536] | 392/392 | Rickettsia sp. Torishima-CC1[AB242434] | 734/734 | R. endosymbiont [DQ081187] | nd | |
387/387** | Rickettsia sp. Scc31 [DQ105801] | |||||||
386/386** | R. endosymbiont [DQ081185] | |||||||
382/382** | Candidatus R. hoogstraalii [FJ767736] | |||||||
84751 | 427/431 | Rickettsia sp. T170 [JQ727680] | 394/394 | Rickettsia sp. LON-13 [AB516961] | 791/791 | Rickettsia sp. Mie180 [JQ697958] | 584/587 | Rickettsia sp. HlR/D91 [KC888951] |
R. heilongjiangensis [CP002912/AY280712]* | Rickettsia sp. LON-2 [AB516960] | Rickettsia sp. LON-13 [AB516964] | 583/587 | Rickettsia sp. FUJ98 [AF169629] | ||||
R. marmionii [AY737683] | 485/488** | Rickettsia sp. LON-13 [AB516963] | ||||||
Rickettsia sp. Hf151 [AB114816] | ||||||||
Rickettsia sp. Hl550 [AB114805] | ||||||||
113618 | 222/222 | R. monacensis [JX625150] | nd | nd | nd |