Spotted fever Rickettsia species in Hyalomma and Ixodes ticks infesting migratory birds in the European Mediterranean area

Katarina Wallménius; Christos Barboutis; Thord Fransson; Thomas GT Jaenson; Per-Eric Lindgren; Fredrik Nyström; Björn Olsen; Erik Salaneck; Kenneth Nilsson

doi:10.1186/1756-3305-7-318

Table 5 Outcome of Blast hit comparison in determining the identity of amplified sequences

From: Spotted fever Rickettsia species in Hyalomma and Ixodes ticks infesting migratory birds in the European Mediterranean area

Sample ID	*ompB*	BLAST hit	*17 kDa*	BLAST hit	*gltA*	BLAST hit	*ompA*	BLAST hit
84154	219/222	Candidatus R. amblyommii [CP003334/JN378402]	nd		nd		nd
		R. helvetica [HQ232249/HQ232247]
		R. amblyommii [AF479763]
		Uncultured Rickettsia sp. clone CsfC2 [EU407140]
84594	424/431	Rickettsia sp. T170-B [JQ727680]	394/394	R. raoultii	nd		nd
		R. heilongjiangensis [CP002912/AY280712]*		Rickettsia sp. RpA4
		Rickettsia sp. IG-1 [EF219461]		Rickettsia sp. ARANHA
				Candidatus R. gravesii
84607	428/431	R. slovaca [CP003375/CP002428]*	392/392	Candidatus R. antechini [DQ372953]	nd		nd
		R. parkeri [CP003341/FJ644549]*	392/394	R. rickettsii [KC845924/CP003311]*
		R. sibirica [HM050273/AF123722]		R. parkeri [CP003341/EF689732]*
		R. conorii [AE006914/AF123726]*		R. philipii [CP003308]
		Rickettsia sp. BJ-90 [AY331393]		R. peacockii [CP001227/AF260571]*
				Rickettsia sp. NOD [EU567178]
84609	220/222	R. slovaca [CP003375/CP002428]*	392/392	Candidatus R. antechini [DQ372953]	nd		nd
		R. parkeri [CP003341/FJ644549]*	392/394	R. rickettsii [KC845924/CP003311]*
		R. rickettsii [CP003311]		R. parkeri [CP003341/EF689732]*
		R. philipii [CP003308]		R. philipii [CP003308]
		R. sibirica [HM050273/AF123722]		R. peacockii [CP001227/AF260571]*
		R. conorii [AE006914/AF123726]*		Rickettsia sp. NOD [EU567178]
		R. mongolotimonae [DQ097083/AF123715]
		Rickettsia sp. BJ-90 [AY331393]
		Uncultured Rickettsia sp. clone B3[DQ019321]
84748	185/187	Candidatus R. hoogstraalii [EF629536]	392/392	Rickettsia sp. Torishima-CC1[AB242434]	734/734	R. endosymbiont [DQ081187]	nd
			387/387**	Rickettsia sp. Scc31 [DQ105801]
			386/386**	R. endosymbiont [DQ081185]
			382/382**	Candidatus R. hoogstraalii [FJ767736]
84751	427/431	Rickettsia sp. T170 [JQ727680]	394/394	Rickettsia sp. LON-13 [AB516961]	791/791	Rickettsia sp. Mie180 [JQ697958]	584/587	Rickettsia sp. HlR/D91 [KC888951]
		R. heilongjiangensis [CP002912/AY280712]*		Rickettsia sp. LON-2 [AB516960]		Rickettsia sp. LON-13 [AB516964]	583/587	Rickettsia sp. FUJ98 [AF169629]
				R. marmionii [AY737683]			485/488**	Rickettsia sp. LON-13 [AB516963]
				Rickettsia sp. Hf151 [AB114816]
				Rickettsia sp. Hl550 [AB114805]
113618	222/222	R. monacensis [JX625150]	nd		nd		nd

*Two examples **The deponated sequence at NCBI GenBank is shorter than our sequence.

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