The population genetic structure of Biomphalaria choanomphala in Lake Victoria, East Africa: implications for schistosomiasis transmission

Standley, Claire J; Goodacre, Sara L; Wade, Christopher M; Stothard, J Russell

doi:10.1186/s13071-014-0524-4

Table 3 Diversity estimates per site for COI, 16S and microsatellite data

From: The population genetic structure of Biomphalaria choanomphala in Lake Victoria, East Africa: implications for schistosomiasis transmission

Site	General information		COI sequences		16S sequences		Microsatellite data
Site	Shedding	Habitat	Gene diversity	Nucleotide diversity	Gene diversity	Nucleotide diversity	Average gene div.	Private alleles	F_IS
K001a	N	Marsh	0.836	0.005	0.746	0.005	0.885	0.000	-0.010
K002a	N	Marsh	0.712	0.001	0.978	0.011	0.878	0.029	-0.001
K006a	N	Marsh	0.855	0.014	0.500	0.005	0.790	0.079	-0.077
K006b	N	Lake	0.889	0.026	1.000	0.043	0.843	0.000	0.119
K013b	N	Lake	0.909	0.014	0.879	0.012	0.710	0.139	0.025
K020b	N	Lake	0.933	0.004	0.800	0.006	0.825	0.000	0.083
K029	N	Lake	0.818	0.015	0.583	0.004	0.828	0.000	0.034
T001	Y	Marsh	0.978	0.017	0.867	0.017	0.754	0.016	-0.186
T011	N	Lake	0.927	0.009	0.933	0.016	0.738	0.015	0.073
T016	N	Marsh	0.964	0.016	0.727	0.008	0.743	0.000	-0.077
T026a	N	Marsh	0.964	0.009	0.891	0.005	0.636	0.019	-0.112
T027a	N	Marsh	0.782	0.010	0.923	0.018	0.848	0.014	-0.180
T027b	N	Lake	0.733	0.003	0.956	0.033	0.735	0.050	0.038
T033a	N	Marsh	0.778	0.002	0.711	0.014	0.738	0.000	0.026
T033b	Y	Lake	0.778	0.004	1.000	0.021	0.758	0.014	0.134
T036a	N	Marsh	0.618	0.008	0.818	0.016	0.744	0.013	0.092
T040	N	Lake	0.727	0.003	0.978	0.011	0.803	0.033	0.168
T064a	N	Marsh	0.491	0.002	0.889	0.022	0.783	0.000	0.112
U005	N	Lake	0.864	0.011	0.982	0.027	0.819	0.013	0.101
U012	N	Marsh	0.639	0.010	0.911	0.020	0.845	0.000	0.058
U020	N	Marsh	0.756	0.006	0.583	0.007	0.806	0.028	0.116
U021	N	Marsh	0.844	0.015	0.378	0.002	0.754	0.000	-0.119
U023a	N	Lake	0.644	0.004	0.978	0.033	0.818	0.000	-0.039
U023b	Y	Marsh	0.346	0.004	1.000	0.028	0.878	0.016	0.109
U028	Y	Lake	0.200	0.000	1.000	0.025	0.857	0.015	0.014
U030b	N	Marsh	0.982	0.016	0.982	0.028	0.877	0.000	-0.104
U030c	N	Lake	0.473	0.002	0.844	0.014	NA	NA	NA
U037	Y	Lake	0.836	0.005	0.978	0.019	0.833	0.012	0.091
U046	N	Lake	0.712	0.001	1.000	0.030	0.868	0.025	0.050

Information on infection status with schistosomes and the habitat type are also given. “N” stands for “No” and “Y” represents “Yes”. “div.”stands for diversity and “FIS” indicates the inbreeding co-efficient.

Back to article page

ISSN: 1756-3305

Contact us

Submission enquiries: journalsubmissions@springernature.com

Parasites & Vectors

Contact us