Phlebovirus and Leishmania detection in sandflies from eastern Thrace and northern Cyprus

Ergunay, Koray; Kasap, Ozge Erisoz; Orsten, Serra; Oter, Kerem; Gunay, Filiz; Yoldar, Ayse Zeynep Akkutay; Dincer, Ender; Alten, Bulent; Ozkul, Aykut

doi:10.1186/s13071-014-0575-6

Parasites & Vectors

Table 5 Pairwise comparison of the partial nucleotide (above diagonal) and aminoacid (below diagonal) sequences of the phleboviruses characterized in the study with various sandfly-borne phleboviruses

From: Phlebovirus and Leishmania detection in sandflies from eastern Thrace and northern Cyprus

	Edirne	Girne1	Girne2	TOSV	Naples	Massilia	Punique	Fermo	Provincia	Turkey	Cyprus	Sicilian	Corfu	Chios	Adria	Olbia	Salehabad
Edirne		59.43	56.97	57.38	56.15	32.32	23.53	54.10	35.98	44.44	54.92	55.74	27.76	42.8	74.17	51.46	77.08
Girne1	57.32		60.66	60.66	57.79	34.22	23.51	58.61	46.31	49.18	59.02	59.02	32.70	44.67	53.28	36.89	57.38
Girne2	47.56	54.88		62.08	60.42	33.46	20.00	60.83	33.20	60.66	72.95	70.90	33.84	63.93	49.18	33.61	52.46
TOSV	59.76	63.41	57.32		70.48	35.36	23.53	71.25	39.34	50.82	61.07	61.89	36.88	50.41	54.10	37.30	57.79
Naples	54.88	57.32	54.88	76.83		33.08	21.57	70.42	39.34	48.77	59.02	60.25	35.36	48.77	51.64	36.07	51.23
Massilia	54.88	57.32	58.54	76.83	67.07		45.63	36.12	20.53	27.00	32.32	33.46	66.54	28.80	29.28	19.77	31.18
Punique	41.98	43.90	41.46	63.41	54.88	63.41		20.78	19.91	22.69	23.53	24.31	38.40	21.85	24.39	20.83	19.17
Fermo	56.10	59.76	56.10	85.37	75.61	73.17	57.32		38.93	46.72	57.79	57.79	36.12	47.54	50.82	36.48	54.92
Provincia	32.10	56.10	30.49	34.15	32.93	32.93	40.30	34.15		44.71	37.30	38.11	21.29	40.38	37.66	53.01	37.50
Turkey	51.22	56.10	81.71	59.76	56.10	65.85	41.46	59.76	30.49		81.67	81.25	28.90	75.00	47.23	42.10	45.49
Cyprus	51.22	56.10	82.93	59.76	56.10	65.85	41.46	59.76	30.49	98.78		94.58	32.70	62.50	54.10	37.3	57.79
Sicilian	51.22	56.10	81.71	59.76	56.10	65.85	41.46	59.76	30.49	100.00	98.78		33.46	62.50	54.92	35.25	57.38
Corfu	48.78	54.88	95.12	59.76	56.10	58.54	41.46	57.32	30.49	81.71	82.93	81.71		28.14	25.48	19.39	27.38
Chios	40.00	43.90	82.93	45.12	43.9	46.34	47.89	43.90	35.21	68.29	68.29	68.29	85.37		45.53	39.42	43.03
Adria	82.72	51.22	46.34	54.88	50.00	52.44	41.56	52.44	33.77	50.00	50.00	50.00	46.34	42.86		55.84	78.33
Olbia	56.25	34.15	28.05	36.59	31.71	30.49	38.81	34.15	47.27	28.05	28.05	28.05	28.05	32.39	59.76		53.33
Salehabad	85.37	54.88	51.22	60.98	53.66	56.10	39.02	57.32	31.71	54.88	54.88	54.88	52.44	39.02	97.56	59.76

GenBank accession numbers of virus sequences included in the table are: Edirne virus: KM111515, Girne1 virus: KM111522, Girne2 virus: KM111520, Toscana virus (isolate ISS.Phl3): NC006319, Sandfly Fever Naples virus (isolate Poona): EF095548, Massilia virus: EU725771, Punique virus: FJ848989, Fermo virus: HG793789, Provincia virus: GU446658, Sandfly Fever Turkey virus: GQ847513, Sandfly Fever Cyprus virus: AY962268, Sandfly Fever Sicilian virus (isolate Sabin): EF095551, Corfu virus: GQ165521, Chios virus: AY293623, Adria virus: HM043726, Olbia virus: GU446657, Salehabad virus: JX472403.

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