Table 4 Anaplasmataceae species detected in ticks from Ecuador
Bacterium (no.) | Host/sampling | No. and stage of tick species | Gene | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
msp2 | 16S rRNA | 16S rRNA (EHR) | 16S rRNA (GEP) | Pan-bacterial 16S rRNA | ||||||||
Maximum % identity (bp) | GenBank acc. no. | Maximum % identity (bp) | GenBank acc. no. | Maximum % identity (bp) | GenBank acc. no. | Maximum % identity (bp) | GenBank acc. no. | Maximum % identity (bp) | GenBank acc. no. | |||
A. phagocytophilum or closely related genotypes (10) | Tapir | 1F A. multipunctum | 99.3 (290/292) | CP000235 | ND | Â | ND | Â | ND | Â | NP | Â |
Farm 1, Cow 1 | 3F R. microplus | 96.6-98.3 (280-285/290) | FJ600595 | ND | Â | ND | Â | ND | Â | NP | Â | |
| Â | 2F R. microplus | 97.9 (284/290) | CP000235 | ND | Â | ND | Â | ND | Â | NP | Â | |
| Â | 1F R. microplus | 96.6 (282/292) | AY164493 | 100 (497/497) | JF893938 | ND | Â | ND | Â | NP | Â | |
| Â | 1F R. microplus | 96.5 (278/288) | AY164493 | ND | Â | ND | Â | ND | Â | NP | Â | |
| Â | 1F R. microplus | 96.9 (281/290) | FJ600595 | 100 (497/497) | JF893938 | ND | Â | ND | Â | NP | Â | |
Vegetation | 1M A. multipunctum | 99.3 (289/291) | AY626255 | ND | Â | ND | Â | ND | Â | NP | Â | |
A. marginale (2) | Farm 1, Cow 2 | 1F R. microplus | ND | Â | ND | Â | 100 (305/305) | CP001079 | 100 (297/297) | CP001079 | 100 (1129/1129) | CP000030 |
JN558818 | JN558818 | |||||||||||
DQ648489 | EU436153 | |||||||||||
CP001759 | ||||||||||||
| Â | Farm 1, Cow 3 | 1F R. microplus | ND | Â | ND | Â | 100 (305/305) | CP001079 | 100 (297/297) | CP001079 | 100 (1129/1129) | CP000030 |
JN558818 | JN558818 | |||||||||||
DQ648489 | EU436153 | |||||||||||
CP001759 | ||||||||||||
Anaplasma spp. (3) | Farm 1, Cow 2 | 1M R. microplus | ND | Â | ND | Â | 100 (305/305) | CP001079 | ND | Â | 99.4 (1222/1229) | JQ480818* |
JN558818 | ||||||||||||
DQ648489 | ||||||||||||
CP001759 | ||||||||||||
| Â | Farm 1, Cow 3 | 1M R. microplus | ND | Â | ND | Â | 100 (305/305) | CP001079 | 100 (297/297) | CP001079 | 99.4 (1222/1229) | JQ480818* |
JN558818 | JN558818 | |||||||||||
DQ648489 | EU436153 | |||||||||||
CP001759 | ||||||||||||
| Â | Farm 2, Cow 1 | 1F R. microplus | ND | Â | ND | Â | ND | Â | 100 (297/297) | CP001079 | 99.4 (1222/1229) | JQ480818* |
JN558818 | ||||||||||||
EU436153 | ||||||||||||