Table 1 Amino acid position of conserved domain for ABC subfamily of C. rogercresseyi
From: Transcriptomic insights on the ABC transporter gene family in the salmon louse Caligus rogercresseyi
Amino acid position | |||||||
|---|---|---|---|---|---|---|---|
Contig | Description | Type transporter | Lenght predict amino acid sequence | TMD1 | NBD1 | TMD2 | NBD2 |
Contig 161 | ABC protein, subfamily ABCA | Full | 2,209 | 550-754 | 814-1,032 | 1,583-1,739 | 1,885-2,091 |
Contig 4521 | ABC protein, subfamily ABCB | Full | 1,131 | 28-255 | 336-678 | 711-988 | 1,035-1,269 |
Contig 2865 | ABC protein, subfamily ABCC | Full | 1,456 | 284-565 | 607-818 | 890-1,168 | 1,207-1434 |
Contig 3071 | ABC protein, subfamily ABCD | Half | 538 | 7-243 | 327-532 | - | - |
Contig 3516 | ABC protein, subfamily ABCE | Half | 616 | - | 92-347 | - | 363-608 |
Contig 1258 | ABC protein, subfamily ABCF | Half | 544 | - | 6-224 | - | 319-513 |
Contig15272 | ABC protein, subfamily ABCG | Half | 975 | - | 58-238 | 327-583 | - |
Contig 6402 | ABC protein, subfamily ABCH | Half | 745 | - | 34-249 | 496-710 | - |