Table 1 Summary of the genetic/population parameters assessed for P. papatasi populations from Egypt and Jordan
Population | PPAW | PPJM | PPJS | ALLDATA |
|---|---|---|---|---|
Number of sequences | 30 | 36 | 33 | 99 |
Number of sites | 369 | 369 | 369 | 369 |
 Monomorphic sites | 346 | 351 | 351 | 339 |
 Polymorphic sites | 23 | 18 | 18 | 30 |
Singleton variable sites | 8 | 3 | 4 | 9 |
 Site positions | 12 48 129 178 185 207 217 | 22 330 351 | 48 134 304 363 | 12 22 129 185 217 304 330 351 360 |
Parsimony informative sites | 15 | 15 | 14 | 21 |
 Site positions | 9 29 119 130 132 134 142 173 189 216 312 340 345 352 363 | 9 26 119 130 132 134 142 172 173 178 189 301 312 340 345 | 9 26 29 119 130 132 142 172 173 178 189 207 340 345 | 9 26 29 48 119 130 132 134 142 172 173 178 189 207 216 301 312 340 345 352 363 |
Segregating sites (S) | 23 | 18 | 18 | 30 |
Total number of mutations (Eta) | 23 | 18 | 18 | 30 |
Total number of synonymous changes | 10 | 5 | 5 | 11 |
 Site positions | 9 12 48 129 132 178 207 216 312 360 | 9 132 172 178 312 | 9 48 132 178 207 | 9 12 48 129 132 172 178 207 216 312 360 |
Total number of replacement changes | 13 | 13 | 13 | 19 |
 Site positions | 29 119 130 134 142 173 185 189 217 340 345 352 363 | 22 26 119 130 134 142 173 189 301 330 340 345 351 | 26 29 119 130 134 142 172 173 189 304 340 345 363 | 22 26 29 119 130 134 142 173 185 189 217 301 304 330 340 345 351 352 363 |
Number of haplotypes | 26 | 28 | 25 | 73 |
Haplotype diversity (Hd) | 0.989 | 0.981 | 0.966 | 0.986 |
 Standard Deviation of Hd | 0.013 | 0.013 | 0.022 | 0.006 |
Nucleotide diversity (Pi) | 0.017 | 0.011 | 0.012 | 0.014 |
 Standard deviation of Pi | 0.00094 | 0.00097 | 0.00085 | 0.00063 |
Theta (per site) from Eta | 0.01573 | 0.01176 | 0.01202 | 0.01573 |
Theta (per site) from S (Theta-W) | 0.01573 | 0.01176 | 0.01202 | 0.01573 |
 Standard deviation of theta (no recombination) | 0.0057 | 0.0044 | 0.0045 | 0.0047 |
 Standard deviation of theta (free recombination) | 0.0033 | 0.0028 | 0.0028 | 0.0029 |
Theta (per site) from Pi | 0.0174 | 0.0111 | 0.0118 | 0.0145 |
Average number of nucleotide differences (k) | 6.274 | 4.049 | 4.292 | 5.225 |
Theta estimated from Eta | 5.806 | 4.341 | 4.435 | 5.806 |
Fu and Li’s D test statistic | −0.5533 | 0.5303 | 0.2017 | −1.0383 |
 Statistical significance | NS (P > 0.10) | NS (P > 0.10) | NS (P > 0.10) | NS (P > 0.10) |
Fu and Li’s F test statistic | −0.3350 | 0.3347 | 0.1194 | −0.8941 |
 Statistical significance | NS (P > 0.10) | NS (P > 0.10) | NS (P > 0.10) | NS (P > 0.10) |
Tajima’s D | 0.2848 | −0.2235 | −0.1094 | −0.2892 |
 Statistical significance | NS (P > 0.10) | NS (P > 0.10) | NS (P > 0.10) | NS (P > 0.10) |
Synonymous sites Tajima’s D(Syn) | −0.6029 | −0.6167 | −0.4688 | −0.7157 |
 Statistical significance | NS (P > 0.10) | NS (P > 0.10) | NS (P > 0.10) | NS (P > 0.10) |
Non synonymous sites Tajima’s D(NonSyn) | 0.9544 | −0.0065 | 0.0742 | 0.0250 |
 Statistical significance | NS (P > 0.10) | NS (P > 0.10) | NS (P > 0.10) | NS (P > 0.10) |
Silent sites Tajima’s D(Sil) | −0.6029 | −0.6167 | −0.4688 | −0.7157 |
 Statistical significance | NS (P > 0.10) | NS (P > 0.10) | NS (P > 0.10) | NS (P > 0.10) |
Tajima’s D (NonSyn/Syn) ratio | −0.1583 | 0.0105 | −0.1582 | −0.0349 |
Ω (Da/Ds) | 0.512 | 0.797 | 0.747 | 0.565 |