Skip to main content

Advertisement

Table 1 Summary of the genetic/population parameters assessed for P. papatasi populations from Egypt and Jordan

From: Phlebotomus papatasi SP15: mRNA expression variability and amino acid sequence polymorphisms of field populations

Population PPAW PPJM PPJS ALLDATA
Number of sequences 30 36 33 99
Number of sites 369 369 369 369
 Monomorphic sites 346 351 351 339
 Polymorphic sites 23 18 18 30
Singleton variable sites 8 3 4 9
 Site positions 12 48 129 178 185 207 217 22 330 351 48 134 304 363 12 22 129 185 217 304 330 351 360
Parsimony informative sites 15 15 14 21
 Site positions 9 29 119 130 132 134 142 173 189 216 312 340 345 352 363 9 26 119 130 132 134 142 172 173 178 189 301 312 340 345 9 26 29 119 130 132 142 172 173 178 189 207 340 345 9 26 29 48 119 130 132 134 142 172 173 178 189 207 216 301 312 340 345 352 363
Segregating sites (S) 23 18 18 30
Total number of mutations (Eta) 23 18 18 30
Total number of synonymous changes 10 5 5 11
 Site positions 9 12 48 129 132 178 207 216 312 360 9 132 172 178 312 9 48 132 178 207 9 12 48 129 132 172 178 207 216 312 360
Total number of replacement changes 13 13 13 19
 Site positions 29 119 130 134 142 173 185 189 217 340 345 352 363 22 26 119 130 134 142 173 189 301 330 340 345 351 26 29 119 130 134 142 172 173 189 304 340 345 363 22 26 29 119 130 134 142 173 185 189 217 301 304 330 340 345 351 352 363
Number of haplotypes 26 28 25 73
Haplotype diversity (Hd) 0.989 0.981 0.966 0.986
 Standard Deviation of Hd 0.013 0.013 0.022 0.006
Nucleotide diversity (Pi) 0.017 0.011 0.012 0.014
 Standard deviation of Pi 0.00094 0.00097 0.00085 0.00063
Theta (per site) from Eta 0.01573 0.01176 0.01202 0.01573
Theta (per site) from S (Theta-W) 0.01573 0.01176 0.01202 0.01573
 Standard deviation of theta (no recombination) 0.0057 0.0044 0.0045 0.0047
 Standard deviation of theta (free recombination) 0.0033 0.0028 0.0028 0.0029
Theta (per site) from Pi 0.0174 0.0111 0.0118 0.0145
Average number of nucleotide differences (k) 6.274 4.049 4.292 5.225
Theta estimated from Eta 5.806 4.341 4.435 5.806
Fu and Li’s D test statistic −0.5533 0.5303 0.2017 −1.0383
 Statistical significance NS (P > 0.10) NS (P > 0.10) NS (P > 0.10) NS (P > 0.10)
Fu and Li’s F test statistic −0.3350 0.3347 0.1194 −0.8941
 Statistical significance NS (P > 0.10) NS (P > 0.10) NS (P > 0.10) NS (P > 0.10)
Tajima’s D 0.2848 −0.2235 −0.1094 −0.2892
 Statistical significance NS (P > 0.10) NS (P > 0.10) NS (P > 0.10) NS (P > 0.10)
Synonymous sites Tajima’s D(Syn) −0.6029 −0.6167 −0.4688 −0.7157
 Statistical significance NS (P > 0.10) NS (P > 0.10) NS (P > 0.10) NS (P > 0.10)
Non synonymous sites Tajima’s D(NonSyn) 0.9544 −0.0065 0.0742 0.0250
 Statistical significance NS (P > 0.10) NS (P > 0.10) NS (P > 0.10) NS (P > 0.10)
Silent sites Tajima’s D(Sil) −0.6029 −0.6167 −0.4688 −0.7157
 Statistical significance NS (P > 0.10) NS (P > 0.10) NS (P > 0.10) NS (P > 0.10)
Tajima’s D (NonSyn/Syn) ratio −0.1583 0.0105 −0.1582 −0.0349
Ω (Da/Ds) 0.512 0.797 0.747 0.565