Table 1 Comparison of assembly statistics
From: Draft genome of Brugia pahangi: high similarity between B. pahangi and B. malayi
| Â | B. pahangi | B. malayi | C. elegans | W. bancrofti | L. loa | wBp | wBm | wWb |
|---|---|---|---|---|---|---|---|---|
Coverage | 168x | 9x | - | 12x | 20x | 168x | 11x | 2x |
Sequence (Mb) | 85.4 | 93.7 | 100 | 81.5 | 91.4 | 1.4 | 1.08 | 1.05 |
#Scaffolds | 29,435 | 24,285 | - | 25,884 | 5,774 | 227 | 1 | 763 |
Scaffolds N50 (kb) | 155.8 | 94 | - | 5.16 | 172 | 933.1 | 1,080 | 1.62 |
GC (%) | 28.54 | 30.2 | - | 29.7 | 31.0 | 34.14 | 34.18 | 34.0 |
Genes (n) | 9,687 | 18,348 | - | 19,327 | 14,907 | 803 | 805 | - |
# reads | 29,569 | 24,285 | 6 | 5,774 | 25,884 | 227 | 1 | 763 |
Length distribution | Â | Â | Â | |||||
Mean (bp) | 2,900 | 3,856 | 16,712,035 | 15,825 | 3,149 | 5,444 | 1,080,084 | 137,9.20 |
Minimum (bp) | 100 | 200 | 13,783,682 | 265 | 500 | 100 | 1,080,084 | 503 |
Maximum (bp) | 1,247,913 | 6,534,162 | 20,924,143 | 1,325,655 | 62,423 | 933,146 | 1,080,084 | 16,892 |
Mode (bp) | 101 with 393 sequences | 908 with 58 sequences | 13,783,682 with 1 sequence | 586 with 13 sequences | 561 with 25 sequences | Â | Â | - |
GC Distribution | Â | Â | Â | |||||
Mean (%) | 28.54 | 28.13 | 35.00 | 27.04 | 27.84 | 34.14 | 34.18 | - |
Minimum (%) | 0.01 | 0 | 34 | 7 | 9 | 0.13 | 34.18 | - |
Maximum (%) | 60.18 | 72 | 36 | 51 | 60 | 43.9 | 34.18 | - |
Mode (%) | 31 with 1,768 sequences | 28 with 2,133 sequences | 35 with 4 sequences | 22 with 340 sequences | 32 with 2,004 sequences | Â | Â | - |
Ambigous Base (N) | Â | Â | Â | |||||
# of sequences with N | 883 (2.99Â %) | 1,011 (4.16Â %) | 0 (0Â %) | 1,160 (20.09Â %) | 1,048 (4.05Â %) | 5 (2.2Â %) | 0 | - |
Assembly quality measure | Â | Â | Â | |||||
N50 | 152,403 | 41,387 | 17,493,784 | 174,388 | 5,161 | 933,146 | 1,080,084 | - |
N90 | 1,249 | 965 | 13,783,682 | 18,595 | 1,343 | 26,271 | 1,080,084 | - |
N95 | 463 | 842 | - | 2,078 | 956 | - | - | - |