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Table 1 Comparison of assembly statistics

From: Draft genome of Brugia pahangi: high similarity between B. pahangi and B. malayi

  B. pahangi B. malayi C. elegans W. bancrofti L. loa wBp wBm wWb
Coverage 168x 9x - 12x 20x 168x 11x 2x
Sequence (Mb) 85.4 93.7 100 81.5 91.4 1.4 1.08 1.05
#Scaffolds 29,435 24,285 - 25,884 5,774 227 1 763
Scaffolds N50 (kb) 155.8 94 - 5.16 172 933.1 1,080 1.62
GC (%) 28.54 30.2 - 29.7 31.0 34.14 34.18 34.0
Genes (n) 9,687 18,348 - 19,327 14,907 803 805 -
# reads 29,569 24,285 6 5,774 25,884 227 1 763
Length distribution    
Mean (bp) 2,900 3,856 16,712,035 15,825 3,149 5,444 1,080,084 137,9.20
Minimum (bp) 100 200 13,783,682 265 500 100 1,080,084 503
Maximum (bp) 1,247,913 6,534,162 20,924,143 1,325,655 62,423 933,146 1,080,084 16,892
Mode (bp) 101 with 393 sequences 908 with 58 sequences 13,783,682 with 1 sequence 586 with 13 sequences 561 with 25 sequences    -
GC Distribution    
Mean (%) 28.54 28.13 35.00 27.04 27.84 34.14 34.18 -
Minimum (%) 0.01 0 34 7 9 0.13 34.18 -
Maximum (%) 60.18 72 36 51 60 43.9 34.18 -
Mode (%) 31 with 1,768 sequences 28 with 2,133 sequences 35 with 4 sequences 22 with 340 sequences 32 with 2,004 sequences    -
Ambigous Base (N)    
# of sequences with N 883 (2.99 %) 1,011 (4.16 %) 0 (0 %) 1,160 (20.09 %) 1,048 (4.05 %) 5 (2.2 %) 0 -
Assembly quality measure    
N50 152,403 41,387 17,493,784 174,388 5,161 933,146 1,080,084 -
N90 1,249 965 13,783,682 18,595 1,343 26,271 1,080,084 -
N95 463 842 - 2,078 956 - - -
  1. wBp, Wolbachia of B. pahangi; wBm, Wolbachia of B. malayi; wWb, Wolbachia of W. bancrofti