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Table 3 Multilocus fragment typing of Cryptosporidium parvum samples sourced from 118 UK calves

From: Development of a framework for genotyping bovine-derived Cryptosporidium parvum, using a multilocus fragment typing tool

  MM5 MM18 MM19 TP14 MS1 MS9 gp60 MLG
  235 288 298 296 361 455 IIaA15G2R1 1
  262 288 298 304 361 455 IIaA15G2R1 2
  235 288 298 296 361 455 IIaA17G1R1 3
  262 288 304 296 361 455 IIaA15G2R1 4
  262 294 292 304 361 455 IIaA15G2R1 5
  262 288 292 296 361 455 IIaA15G2R1 6
  262 294 292 304 361 455 IIaA17G1R1 7
  235 288 292 296 361 455 IIaA18G3R1 8
  262 294 298 296 361 455 IIaA17G1R1 9
  262 294 298 304 361 455 IIaA15G2R1 10
  262 288 292 304 361 455 IIaA15G2R1 11
  262 288 298 296 361 455 IIaA15G2R1 12
  235 288 270 296 361 455 IIaA15G2R1 13
  262 288 316 296 361 455 IIaA15G2R1 14
  262 288 292 296 361 455 IIaA17G1R1 15
  262 288 253 296 361 455 IIaA15G2R1 16
  262 288 298 296 361 455 IIaA16G3R1 17
  262 288 298 296 361 455 IIaA19G1R1 18
  262 318 298 296 361 455 IIaA15G2R1 19
  262 288 298 296 361 455 IIaA17G1R1 20
  262 294 281 296 361 455 IIaA15G2R1 21
  262 294 298 296 361 455 IIaA15G2R1 22
  262 294 292 296 361 455 IIaA18G1R1 23
Typeability 0.91 0.92 0.91 0.90 0.93 0.96 0.97 0.84
(95 % CI) (0.85–0.95) (0.86–0.96) (0.86–0.95) (0.84–0.94) (0.87–0.96) (0.90–0.99) (0.93–0.99) (0.77–0.90)
SID (95 % CI) 0.35 (0.26–0.43) 0.41 (0.32–0.50) 0.60 (0.54–0.67) 0.35 (0.26–0.43) 0.00 (0.00–0.06) 0.00 (0.00–0.06) 0.44 (0.33–0.54) 0.92 (0.90–0.94)
  1. gp60 subgenotypes are included in multilocus genotype (MLG) assignment. Typeability and Simpson’s Index of Diversity (SID) are reported for allele and MLG assignment, with 95 % confidence intervals (95 % CI)