New insights into the genetic diversity of Schistosoma mansoni and S. haematobiumin Yemen

Parasites & Vectors

Table 1 S. mansoni cox1 haplotype polymorphic sites. Each haplotype sequence has been deposited in Genbank

Haplotype code	Genbank accession no.	Variant nucleotide position^a
Haplotype code	Genbank accession no.	810	819	831	846	918	921	939	948	972	978	984	988	993	999	1002	1024
Y1ISM	KP294288	C	C	G	T	T	T	A	T	G	G	C	A	G	G	C	G
Y2DSM	KP294289	A	.	A	.	.	.	.	C	.	.	.	G	.	A	.	.
Y3HSM	KP294290	.	.	A	.	.	.	.	.	.	.	.	G	.	A	.	.
Y4TSM	KP294291	.	.	A	.	.	.	.	.	.	A	T	G	A	A	.	A
Y5TSM	KP294292	.	.	A	.	.	.	.	.	.	A	.	G	A	A	.	.
Y6ISM	KP294293	T	.	A	.	.	.	.	.	.	A	.	G	.	A	.	.
Y7TSM	KP294294	.	.	A	.	.	.	.	.	.	A	.	G	.	A	.	.
Y8TSM	KP294295	.	.	A	.	.	.	.	.	.	.	.	G	.	A	.	A
Y9ISM	KP294296	.	.	A	.	.	.	.	.	.	.	.	G	.	A	.	.
Y10ISM	KP294297	.	.	A	C	C	A	.	.	.	A	.	G	.	A	.	.
Y11ISM	KP294298	.	.	A	C	C	A	.	.	.	.	.	G	.	A	.	.
Y12ISM	KP294299	.	.	A	C	C	A	.	.	.	.	.	G	.	A	T	.
Y13ISM	KP294300	.	.	.	C	C	A	.	.	.	.	.	.	.	.	T	.
Y14ISM	KP294301	.	.	.	C	C	A	.	.	.	.	.	.	.	.	T	A
Y15ISM	KP294302	.	.	.	C	C	A	.	.	.	.	.	.	A	.	T	A
Y16ISM	KP294303	.	.	.	C	C	A	.	.	.	.	.	G	.	.	T	.
Y17ISM	KP294304	.	.	.	C	C	A	.	.	.	A	.	.	.	.	.	.
Y18SSM	KP294305	T	T	.	.	C	G	G	.	A	.	T	G	.	A	T	A
Y19DSM	KP294306	T	T	.	.	.	G	G	.	A	A	.	G	.	A	T	.

^aThe nucleotide location is taken from the numbering of the partial mitochondrial cox1 gene of S. mansoni (Genbank accession no. NC002545.1)
(.) which indicate nucleotides identity

ISSN: 1756-3305