Table 1 Sequencing depth, assembly of RNA-Seq data and total number of proteins identified by MS from TBEV-infected and mock-infected (control) IDE8 and IRE/CTVM19 cells on days 2 (2d) and 6 (6d) p.i
Sample | Mean reads per lane | Total no. of contigs assembled | Mean contig length | Total no. of proteins identified by RP-LC-MS/MS |
|---|---|---|---|---|
IDE8 control 2d | 3.71E + 07 | 44562 | 938 | 907 |
IDE8 infected 2d | 3.25E + 07 | 44907 | 937 | 770 |
IDE8 control 6d | 3.18E + 07 | 44684 | 938 | 824 |
IDE8 infected 6d | 2.96E + 07 | 44474 | 939 | 725 |
IRE/CTVM19 control 2d | 3.03E + 07 | 70701 | 1087 | 835 |
IRE/CTVM19 infected 2d | 2.70E + 07 | 70067 | 1092 | 762 |
IRE/CTVM19 control 6d | 4.44E + 07 | 70842 | 1086 | 1133 |
IRE/CTVM19 infected 6d | 2.61E + 07 | 70273 | 1091 | 1032 |