From: Tick-borne bacterial pathogens in southwestern Finland
Primer/probe name | Primer/probe target | 5’ → 3’ | Reference |
---|---|---|---|
qPCR: | |||
IXO-I2-F4 | Ixodes spp. ITS2 | TCTCGTGGCGTTGATTTGC | This paper |
IXO-I2-R4 | Ixodes spp. ITS2 | CTGACGGAAGGCTACGACG | |
Ipe-I2-P4 | I. persulcatus ITS2 | [FAM]-TGCGTGGAAAGAAAACGAG-[BHQ1] | |
Iri-I2-P4 | I. ricinus ITS2 | [VIC]-TGCTCGAAGGAGAGAACGA-[BHQ1] | |
Bb23Sf | B. burgdorferi 23S RNA | CGAGTCTTAAAAGGGCGATTTAGT | Courtney et al. [83] |
Bb23Sr | B. burgdorferi 23S RNA | GCTTCAGCCTGGCCATAAATAG | |
Bb23Sp | B. burgdorferi 23S RNA | [FAM]-AGATGTGGTAGACCCGAAGCCGAGTG-[BHQ1] | |
Bmi-F | B. miyamotoi glpQ | CACGACCCAGAAATTGACACA | Vayssier-Taussat et al. [84] |
Bmi-R | B. miyamotoi glpQ | GTGTGAAGTCAGTGGCGTAAT | |
Bmi-P | B. miyamotoi glpQ | [FAM]-TCGTCCGTTTTCTCTAGCTCGATTGGG-[BHQ1] | |
Bart-ssRA-F | Bartonella ssRa | GCTATGGTAATAAATGGACAATGAAATAA | Diaz et al. [85] |
Bart-ssRA-R | Bartonella ssRa | GCTTCTGTTGCCAGGTG | |
Bart-ssRA-P | Bartonella ssRa | [FAM]-ACCCCGCTTAAACCTGCGACG-[BHQ1] | |
Rspp-F | Rickettsia gltA | GAGAGAAAATTATATCCAAATGTTGAT | Labruna et al. [86] |
Rspp-R | Rickettsia gltA | AGGGTCTTCGTGCATTTCTT | |
Rspp-P | Rickettsia gltA | [CY5]-CATTGTGCCATCCAGCCTACGGT-[BHQ3] | |
CNe-F | Ca. N. mikurensis groEL | AGAGACATCATTCGCATTTTGGA | Vayssier-Taussat et al. [84] |
CNe-R | Ca. N. mikurensis groEL | TTCCGGTGTACCATAAGGCTT | |
CNe-P | Ca. N. mikurensis groEL | [TAMRA]-AGATGCTGTTGGATGTACTGCTGGACC-[BHQ2] | |
PCR: | |||
CS877f | Rickettsia gltA | TAATACGACTCACTATAGGGGGGGACCTGCTCACGGCGG | Mediannikov et al. [87] |
CS1258r | Rickettsia gltA | ATTAACCCTCACTAAAGATTGCAAAAAGTACAGTGAACA |