Table 2 Nucleotide variations in the apicoplasts from geographical samples compared to the C. cayetanensis apicoplast reference genome
Base position | Ref Genome | Rhodeisland-1 | Indonesia-1 | Indonesia-2 | Indonesia-3 | Virginia-1 |
|---|---|---|---|---|---|---|
1 | C | T | T | T | T | C |
533 | T | T | T | C | T | T |
557 | TTTT | AAAA | TTTT | TTTT | TTTT | AAAA |
1898 | A | T | T | T | T | A |
2242 | T | T | A | A | T | T |
6002 | C | C | C | C | A | C |
6110 | T | A | A | A | A | T |
7047 | C | C | C | C | C | T |
7373 | G | T | G | T | G | G |
7374 | A | C | A | C | A | A |
7780 | T | T | GGAT | T | T | T |
10,623 | C | A | C | C | C | C |
12,759 | T | DEL | T | T | T | T |
12,760 | A | DEL | A | A | A | A |
14,600 | A | A | DEL | A | A | A |
15,493 | A | T | T | T | T | A |
18,625 | T | A | A | A | A | T |
18,629 | T | C | T | T | T | T |
20,515 | G | G | G | G | G | A |
20,555 | T | T | T | T | T | G |
26,122 | T | T | G | T | T | G |
31,938 | A | A | T | T | T | A |
32,282 | T | A | A | A | A | T |
33,620 | AAAA | AAAA | AAAA | TTTT | AAAA | TTTT |
33,647 | A | A | A | G | A | A |