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Table 1 Nucleotide diversity and summary statistics of Pvama1 in 73 P. vivax isolates from the China-Myanmar border area. The total sequenced region includes codons 50 to 479: Domain I codons 94 to 247 (nt, 280–741), Domain II codons 265 to 363 (nt, 793–1,089), and Domain III codons 388 to 451 (nt, 1,162–1,353)

From: Analysis of Pvama1 genes from China-Myanmar border reveals little regional genetic differentiation of Plasmodium vivax populations

  k H Hd ± SD S η π ± SD θ ± SD D D* F* MK
Total 10.895 41 0.958 ± 0.014 43 46 0.008 ± 0.000 0.007 ± 0.002 0.495 0.772 0.796 0.0001***
D I 7.433 27 0.919 ± 0.022 26 28 0.016 ± 0.000 0.012 ± 0.004 0.912 0.269 0.608 0.004**
D II 1.385 9 0.783 ± 0.031 5 5 0.005 ± 0.000 0.003 ± 0.002 0.780 1.064 1.142 0.064
D III 0.419 3 0.330 ± 0.004 2 2 0.002 ± 0.000 0.002 ± 0.002 0.031 0.712 0.589 0.478
  1. Abbreviations: SD standard deviation, k the average number of nucleotide differences, H number of haplotypes, Hd haplotype diversity, S number of polymorphic (segregating) sites, η the total number of mutations, π pairwise nucleotide diversity, θ the expected nucleotide diversity under neutrality derived from S. D Tajima’s D test, D* Fu and Li’s D* value, F* Fu and Li’s F* value, MK McDonald-Kreitman test
  2. **P < 0.01; ***P < 0.0001
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Parasites & Vectors

ISSN: 1756-3305

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