Skip to main content

Table 3 Similarity ratios produced by pairwise alignment of LmlRab with Leishmania strains ortholog sequences

From: Leishmania major large RAB GTPase is highly immunogenic in individuals immune to cutaneous and visceral leishmaniasis

Leishmania strain Chromosome/Gene ID Genomic coordinates Producta Similarity % Similarity % Similarity %
L. major HV P25 (Tunisia) N-ter C-Ter
AY962589.1 AY962589.1 AY962589.1
N (%) P (%) N (%) P (%) N (%) P (%)
L. major Friedlin LmjF.31.0860 315900–317732 (–) ras-like small GTPases, putative 99.60 98.90 99.5 98.9 99.6 98.8
L. major strain SD 75.1 JH605118.1 298109–299941 (–) not yet annotated 99.60 98.90 99.5 98.8 99.5 98.9
L. major strain LV39c5 KB217892.1 1129713–1131545 not yet annotated 99.50 98.70 99.5 98.9 99.6 98.6
L. infantum JPCM5 LinJ.31.0890 322703–324532 (–) ras-like small GTPases, putative 94.40 91.00 94.00 94.5 93.0 89.3
L. donovani BPK282A1 LdBPK_310890.1 329426–331255 (–) not yet annotated 93.30 90.80 94.2 95.1 92.6 88.6
L. tropica L590 KE147396.1 108776–110605 (–) not yet annotated 94.30 90.70 90.4 94.0 87.1 89.0
L. tropica L590 KE147396.1 100399–102228 (–) not yet annotated 94.30 90.70 95.4 95.1 93.6 89.3
L. mexicana U1103 LmxM.30.0860 324259–326091 (–) ras-like small GTPases, putative 93.10 90.50 96.2 90.2 88.0 79.4
L. amazonensis M2269 KE390271.1 700–2532 not yet annotated 94.20 90.50 90.4 89.6 87.1 78.3
L. aethiopica L147 AUMB01001544.1 10483–12315 not yet annotated 88.70 82.70 95.4 93.4 93.8 89.5
L. aethiopica L147 AUMB01001560.1 101–1933 not yet annotated 88.10 81.70 95.4 93.4 93.8 89.5
L. braziliensis M2904 LbrM.31.1020 360616–362445 (–) ras-like small GTPases, putative 74.50 63.80 78.1 74.3 72.9 59.3
L. braziliensis M2903 LbrM2903_31_1140 408882–410711 (–) ras-like small GTPases, putative 74.40 63.70 78.3 74.3 72.9 59.3
  1. aAccording to TriTrypDB release 24 (15/04/2015) www.tritrypdb.org
  2. For each of the selected Leishmania strains, the chromosome (or gene ID if chromosome were not assembled yet), the genomic coordinates and the gene product as described in the TriTrypDB server (Release 24 of 15/04/2015) is provided. Similarity ratios were drawn from pairwise alignments of both nucleic (columns noted “N”) and peptidic (columns noted “P”) sequences, regarding the entire gene sequence (column named “L. major HV P25 (Tunisia)”), the so called N-terminal region ranging from residue 1 to 183 (column named “N Ter”) and the so called C-terminal region ranging from residue 184 to 611 (column named “C Ter”)