Skip to main content

Table 6 Complete sequencing results for the six loci and ambiguity occurrences. Those cattle for whom all six loci sequences were obtained are in bold. The strain clustering within the two major groups, based on the concatenation of five (all but msp4) or six loci, is indicated in the last column

From: Co-circulation of different A. phagocytophilum variants within cattle herds and possible reservoir role for cattle

Bovine ID Sampling date (year/month/day) Date of birth typA ctrA msp4 pleD recG polA Group in NJ tree
Twice-positive French samples
BV2802 (Bull) 2014/10/09 2011/11/27 OK OK OK OK OK OK A
BV2802 (Bull) 2016/03/04 OK OK OK OK OK OK B
BV9949 2016/03/04 2014/03/12 OK OK OK OK OK OK A
 BV9949 2016/05/17 1 AS OK OK OK OK OK  
 BV0001 2016/03/04 2015/04/05 1 AS OK 6 AS OK OK 2 AS  
 BV0001 2016/05/17 3 AS OK 9 AS 19 AS OK 1 AS  
 BV0006 2016/03/04 2015/04/27 1 AS OK OK OK OK OK  
 BV0006 2016/05/17 OK OK 9 AS OK OK 2 AS  
 BV0016 2016/03/04 2015/11/14 OK na 4 AS OK OK na  
 BV0016 2016/05/17 OK OK OK OK na 2 AS  
BV0012 2016/10/25 2015/07/09 OK OK OK OK OK OK B
BV0012 2017/05/16 OK OK OK OK OK OK A
BV0047 2016/10/25 2016/08/29 OK OK OK OK OK OK A
BV0047 2017/05/16 OK OK OK OK OK OK A
BV0048 2016/10/25 2016/08/31 OK OK OK OK OK OK A
BV0048 2017/05/16 OK OK OK OK OK OK B
Other French samples
BV1551 2014/10/09 2003/01/02 OK OK OK OK OK OK B
BV9932 2014/10/09 2013/05/03 OK OK OK OK OK OK A
 BV9940 2014/10/09 2013/05/16 (dead 2015/02/23) 2 AS OK 3 AS 19 AS na OK  
 BV9942 2014/10/09 2013/05/27 OK OK OK OK na OK  
 BV9952 2014/10/09 2014/04/13 3 AS OK 5 AS OK na OK  
 BV9873 2014/10/09 2012/03/11 (dead 2016/06/09) OK OK 2 AS na na na  
 BV9959 2016/03/04 2014/05/05 OK na OK na OK OK  
BV2193 2016/05/17 na OK OK OK OK OK OK A
BV2302 2016/05/17 na OK OK OK OK OK OK B
BV3559 2016/05/17 na OK OK OK OK OK OK A
 BV0013 2016/05/17 2015/07/09 1 AS OK 10 AS OK 2 AS 1 AS  
BV9955 2016/05/17 2014/04/15 OK OK OK OK OK OK B
 BV0027 2017/05/16 2016/04/13 5 AS OK OK OK OK OK  
 BV0049 2017/05/16 2016/10/05 5 AS OK OK 19 AS 1 AS 2 AS  
 BV0056 2017/05/16 2016/11/23 OK na OK OK OK OK  
Twice-positive German samples
 BV46 2011/05/22 2008/08/27 OK OK na OK OK OK A
BV46 2011/08/21 OK OK OK OK OK OK A
 BV58 2011/05/17 2008/08/18 OK OK na OK OK OK A
 BV58 2011/07/09 OK OK OK OK OK na A
 BV61 2011/06/22 2008/10/15 OK OK na OK OK OK A
 BV61 2011/07/09 OK OK na OK OK OK A
Other German samples
BV49 2011/05/19 2008/03/12 OK OK OK OK OK OK A
BV34 2010/10/17 2007/10/14 OK OK OK OK OK OK A
BV57 2011/06/04 2007/11/27 OK OK OK OK OK OK A
  1. Abbreviations: OK complete sequence for the locus, without double peaks, AS ambiguous sites, na not available