Table 1 Summary of sequence reads mapping to the genome of Sus scrofa and Cryptosporidium parvuma
| Â | S. scrofa | C. parvum b | ||||||
|---|---|---|---|---|---|---|---|---|
Sample | Overall align rate (%) | Uniquely aligned seqs | Aligned > 1 time | Unaligned seqs | Overall align rate (%) | Uniquely aligned seqs | Aligned > 1 time | Unaligned seqs |
1-infec | 75.1 | 4,649,709 (66.4%) | 604,112 (8.6%) | 1,746,179 (25.0%) | 7.2 | 122,751 (7.0%) | 2,988 (0.17%) | 1,620,440 (92.8%) |
2-infec | 75.7 | 4,688,821 (66.9%) | 611,073 (8.7%) | 1,700,106 (24.3%) | 6.3 | 104,797 (6.2%) | 2,966 (0.17%) | 1,592,343 (93.7%) |
3-infec | 74.9 | 4,637,493 (66.2%) | 608,208 (8.7%) | 1,754,299 (25.1%) | 6.7 | 114,070 (6.5%) | 3,036 (0.17%) | 1,637,193 (93.2%) |
4-infec | 75.4 | 4,657,387 (66.5%) | 618,759 (8.8%) | 1,723,854 (24.6%) | 6.9 | 115,771 (6.7%) | 3,210 (0.19%) | 1,604,873 (93.1%) |
5-ctrl | 77.0 | 4,783,118 (68.3%) | 606,596 (8.7%) | 1,610,286 (23.0%) | 0 | 39 (0%) | 5 (0%) | 1,610,242 (100%) |
6-ctrl | 76.8 | 4,779,410 (68.2%) | 599,281 (8.6%) | 1,621,309 (23.2%) | 0 | 50 (0%) | 2 (0%) | 1,621,257 (100%) |
7-ctrl | 76.4 | 4,746,496 (67.8%) | 604,476 (8.6%) | 1,649,028 (23.6%) | 0 | 24 (0%) | 2 (0%) | 1,649,002 (100%) |
8-ctrl | 76.9 | 4,775,767 (68.2%) | 605,605 (8.6%) | 1,618,628 (23.1%) | 0 | 30 (0%) | 6 (0%) | 1,618,592 (100%) |
oocysts | – | 1037 (0%) | – | – | – | 5,859,947 (83.7%) | – | – |