Skip to main content

Advertisement

Table 1 Summary of sequence reads mapping to the genome of Sus scrofa and Cryptosporidium parvuma

From: Transcriptome analysis of pig intestinal cell monolayers infected with Cryptosporidium parvum asexual stages

  S. scrofa C. parvum b
Sample Overall align rate (%) Uniquely aligned seqs Aligned > 1 time Unaligned seqs Overall align rate (%) Uniquely aligned seqs Aligned > 1 time Unaligned seqs
1-infec 75.1 4,649,709 (66.4%) 604,112 (8.6%) 1,746,179 (25.0%) 7.2 122,751 (7.0%) 2,988 (0.17%) 1,620,440 (92.8%)
2-infec 75.7 4,688,821 (66.9%) 611,073 (8.7%) 1,700,106 (24.3%) 6.3 104,797 (6.2%) 2,966 (0.17%) 1,592,343 (93.7%)
3-infec 74.9 4,637,493 (66.2%) 608,208 (8.7%) 1,754,299 (25.1%) 6.7 114,070 (6.5%) 3,036 (0.17%) 1,637,193 (93.2%)
4-infec 75.4 4,657,387 (66.5%) 618,759 (8.8%) 1,723,854 (24.6%) 6.9 115,771 (6.7%) 3,210 (0.19%) 1,604,873 (93.1%)
5-ctrl 77.0 4,783,118 (68.3%) 606,596 (8.7%) 1,610,286 (23.0%) 0 39 (0%) 5 (0%) 1,610,242 (100%)
6-ctrl 76.8 4,779,410 (68.2%) 599,281 (8.6%) 1,621,309 (23.2%) 0 50 (0%) 2 (0%) 1,621,257 (100%)
7-ctrl 76.4 4,746,496 (67.8%) 604,476 (8.6%) 1,649,028 (23.6%) 0 24 (0%) 2 (0%) 1,649,002 (100%)
8-ctrl 76.9 4,775,767 (68.2%) 605,605 (8.6%) 1,618,628 (23.1%) 0 30 (0%) 6 (0%) 1,618,592 (100%)
oocysts 1037 (0%) 5,859,947 (83.7%)
  1. aSequences were rarified to 7 × 106/sample
  2. bSequence that did not align to the pig genome were aligned to C. parvum