Table 3 Significantly enriched functions in the host cell transcriptome based on the analysis of 100 S. scrofa genes with the highest FPKM values
Category | Term | Gene count | Fold enrich. | Bonferronia | Benjaminia | FDRa |
|---|---|---|---|---|---|---|
UP_KEYWORDS | Ribosomal protein | 38 | 79.30634 | 9.3879E-62 | 9.3879E-62 | 8.3E-61 |
UP_KEYWORDS | Ribonucleoprotein | 38 | 65.58024 | 6.2878E-58 | 3.1439E-58 | 5.56E-57 |
KEGG_PATHWAY | ssc03010: Ribosome | 41 | 28.99698 | 5.0057E-50 | 5.0057E-50 | 6.79E-49 |
GOTERM_MF_DIRECT | GO:0003735~structural constituent of ribosome | 41 | 29.07368 | 4.3664E-48 | 4.3664E-48 | 4.59E-47 |
GOTERM_BP_DIRECT | GO:0006412~translation | 34 | 27.72683 | 2.8412E-37 | 2.8412E-37 | 1.1E-36 |
UP_KEYWORDS | Acetylation | 37 | 18.14443 | 3.5317E-34 | 1.1772E-34 | 3.12E-33 |
GOTERM_CC_DIRECT | GO:0022627~cytosolic small ribosomal subunit | 18 | 71.36052 | 3.98E-26 | 3.98E-26 | 4.28E-25 |
GOTERM_CC_DIRECT | GO:0022625~cytosolic large ribosomal subunit | 19 | 53.41227 | 5.2961E-25 | 2.648E-25 | 5.69E-24 |
UP_KEYWORDS | Phosphoprotein | 33 | 9.461551 | 5.8773E-21 | 1.4693E-21 | 5.2E-20 |
GOTERM_CC_DIRECT | GO:0070062~extracellular exosome | 43 | 4.181397 | 1.2331E-15 | 4.1104E-16 | 1.33E-14 |
GOTERM_CC_DIRECT | GO:0005925~focal adhesion | 21 | 13.99527 | 1.3908E-15 | 3.477E-16 | 1.5E-14 |
GOTERM_CC_DIRECT | GO:0005840~ribosome | 13 | 45.68154 | 3.6801E-15 | 7.3603E-16 | 3.96E-14 |
UP_KEYWORDS | Ubl conjugation | 17 | 19.18998 | 4.3965E-14 | 8.7708E-15 | 3.89E-13 |
UP_KEYWORDS | Isopeptide bond | 15 | 24.92816 | 8.793E-14 | 1.4655E-14 | 7.77E-13 |
GOTERM_MF_DIRECT | GO:0044822~poly(A) RNA binding | 26 | 5.315667 | 3.7013E-10 | 1.8506E-10 | 3.89E-09 |
UP_KEYWORDS | Cytoplasm | 21 | 7.332953 | 4.9698E-10 | 7.0997E-11 | 4.4E-09 |
GOTERM_CC_DIRECT | GO:0016020~membrane | 24 | 5.248581 | 4.9125E-09 | 8.1875E-10 | 5.28E-08 |
GOTERM_BP_DIRECT | GO:0002181~cytoplasmic translation | 7 | 40.70384 | 4.3892E-06 | 2.1946E-06 | 1.7E-05 |
GOTERM_CC_DIRECT | GO:0015935~small ribosomal subunit | 4 | 123.6916 | 0.0002591 | 3.7018E-05 | 0.002786 |
GOTERM_BP_DIRECT | GO:0000028~ribosomal small subunit assembly | 5 | 47.76471 | 0.0009287 | 0.00030966 | 0.003596 |
GOTERM_BP_DIRECT | GO:0000027~ribosomal large subunit assembly | 5 | 39.33564 | 0.00216972 | 0.00054287 | 0.008406 |
GOTERM_MF_DIRECT | GO:0003729~mRNA binding | 7 | 13.09892 | 0.00146297 | 0.0004879 | 0.015379 |
GOTERM_MF_DIRECT | GO:0098641~cadherin binding involved in cell-cell adhesion | 4 | 67.36585 | 0.00221329 | 0.00055378 | 0.023274 |
UP_KEYWORDS | Glycoprotein | 12 | 5.067748 | 0.00274581 | 0.00034364 | 0.024321 |
GOTERM_CC_DIRECT | GO:0031012~extracellular matrix | 7 | 12.02557 | 0.00238484 | 0.00029842 | 0.025667 |