Table 2 Substitutions of intra-assemblage B in bg, tpi and gdh sequences

bg

60

66

267

294

328

483

Ref. sequence

G

T

C

C

G

C

KM977640

Ba1 (1)

G

T

C

C

G

C

MH598574

Ba2 (25)

G

C

C

C

G

C

MH598579

Ba3 (7)

A

T

C

T

G

C

MH598575

Ba4 (7)

G

C

T

C

G

C

MH598578

Ba5 (11)

G

C

C

C

G

T

MH598576

Ba6 (1)

G

C

C

C

A

C

MH598577

tpi

218

240

282

405

490

Ref. sequence

C

G

C

A

G

HQ666898

Bb1 (6)

C

G

C

A

G

MH598587

Bb2 (4)

T

G

C

G

G

MH598589

Bb3 (1)

T

G

C

G

T

MH598588

Bb4 (1)

T

A

T

G

G

MH598586

gdh

192

282

369

396

477

Ref. sequence

T

C

A

T

C

HM134212

Bc1 (2)

T

C

A

T

C

MH598585

Bc2 (8)

C

C

A

C

C

MH598582

Bc3 (4)

T

C

A

C

T

MH598583

Bc4 (3)

T

C

A

C

C

MH598581

Bc5 (8)

T

T

G

C

C

MH598580

Bc6 (2)

T

T

A

C

C

MH598584