Comparative analysis of apicoplast genomes of Babesia infective to small ruminants in China

Wang, Xiaoxing; Wang, Jinming; Liu, Junlong; Liu, Aihong; He, Xin; Xu, Jianlin; Li, Zhi; Zhao, Shuaiyang; Li, Youquan; Yin, Hong; Luo, Jianxun; Guan, Guiquan

doi:10.1186/s13071-019-3581-x

Parasites & Vectors

Table 2 Gene contents of the apicoplast genomes of six ovine Babesia isolates

From: Comparative analysis of apicoplast genomes of Babesia infective to small ruminants in China

Class	Babesia sp. Xinjiang	Babesia sp. Dunhuang	Babesia motasi Lintan	Babesia motasi Tianzhu	Babesia motasi Ningxian	Babesia motasi Hebei
Ribosomal RNA	LSU, SSU	LSU, SSU	LSU, SSU	LSU, SSU	LSU, SSU	LSU, SSU
Transfer RNA	Thr^TGT, Gly^TCC, Met^CAT, His^GTG, Ser^GCT, Asp^GTC, Glu^TTC, Tyr^GTA, Cys^GCA, Lys^TTT, Asn^GTT, Pro^TGG, Ser^TGA, Gln^TTG, Trp^CCA, Arg^TCT, Met^CAT, Phe^GAA, Leu^TAG, Val^TAC, Ala^TGC, Ile^GAT, Arg^ACG	Thr^TGT, Gly^TCC, Met^CAT, His^GTG, Ser^GCT, Asp^GTC, Glu^TTC, Tyr^GTA, Cys^GCA, Lys^TTT, Asn^GTT, Pro^TGG, Ser^TGA, Gln^TTG, Trp^CCA, Arg^TCT, Met^CAT, Phe^GAA, Leu^TAG, Val^TAC, Ala^TGC, Ile^GAT, Arg^ACG	Thr^TGT, Gly^TCC, Met^CAT, His^GTG, Ser^GCT, Lys^TTT, Asp^GTC, Glu^TTC, Tyr^GTA, Cys^GCA, Lys^TTT, Asn^GTT, Pro^TGG, Ser^TGA, Gln^TTG, Trp^CCA, Arg^TCT, Met^CAT, Phe^GAA, Leu^TAG, Val^TAC, Ala^TGC, Ile^GAT, Arg^ACG	Thr^TGT, Gly^TCC, Met^CAT, His^GTG, Ser^GCT, Lys^TTT, Asp^GTC, Glu^TTC, Tyr^GTA, Cys^GCA, Lys^TTT, Asn^GTT, Pro^TGG, Ser^TGA, Gln^TTG, Trp^CCA, Arg^TCT, Met^CAT, Phe^GAA, Leu^TAG, Val^TAC, Ala^TGC, Ile^GAT, Arg^ACG	Thr^TGT, Gly^TCC, Met^CAT, His^GTG, Ser^GCT, Asp^GTC, Glu^TTC, Tyr^GTA, Cys^GCA, Lys^TTT, Asn^GTT, Pro^TGG, Ser^TGA, Gln^TTG, Trp^CCA, Arg^TCT, Met^CAT, Phe^GAA, Leu^TAG, Val^TAC, Ala^TGC, Ile^GAT, Arg^ACG	Thr^TGT, Gly^TCC, Met^CAT, His^GTG, Ser^GCT, Asp^GTC, Glu^TTC, Tyr^GTA, Cys^GCA, Lys^TTT, Asn^GTT, Pro^TGG, Ser^TGA, Gln^TTG, Trp^CCA, Arg^TCT, Met^CAT, Phe^GAA, Leu^TAG, Undet^NNN, Ala^TGC, Ile^GAT, Arg^ACG
Ribosomal proteins	rpl2, rpl4, *rpl5, rpl6, rpl14, rpl16; rps2, rps3, rps4, rps5, rps7, rps8, rps11, rps12, rps*19,	rpl2, rpl4, *rpl5, rpl6, rpl14, rpl16; rps2, rps3, rps4, rps5, rps7, rps8, rps11, rps12, rps*19,	rpl2, rpl4, rpl6, rpl14, rpl16; rps2, rps3, rps4, rps5, rps7, rps11, rps12, rps19	rpl2, rpl4, rpl6, rpl14, rpl16; rps2, rps3, rps4, rps5, rps7, rps11, rps12, rps19	rpl2, rpl4, rpl6, rpl14, rpl16; rps2, rps3, rps4, rps5, rps7, rps11, rps12, rps19	rpl2, rpl4, rpl6, rpl14, rpl16; rps2, rps3, rps4, rps5, rps7, rps11, rps12, rps19
RNA polymerase	rpoB1, *rpoB2, rpoC1, rpoC2a, rpo*C2b	rpoB1, *rpoB2, rpoC1, rpoC2a, rpo*C2b	rpoB, rpoC1, rpoC2a, rpoC2b	rpoB, rpoC1, rpoC2a, rpoC2b	rpoB, rpoC1, rpoC2a, rpoC2b	rpoB, rpoC1, rpoC2a, rpoC2b
Other proteins	clpC1, clpC2, tufA	clpC1, clpC2, tufA	clpC1, clpC2, tufA	clpC1, clpC2, tufA	clpC1, clpC2, tufA	clpC1, clpC2, tufA
Unassigned ORFs	7 ORFs (hyp1-7)	7 ORFs (hyp1-7)	11 ORFs (hyp1-11)	11 ORFs (hyp1-11)	9 ORFs (hyp1-9)	9 ORFs (hyp1-9)

Note: The bold indicates that Babesia sp. are different from Babesia motasi in Gene contents of the apicoplast genomes

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ISSN: 1756-3305

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