Target gene | Primer name | Primer sequence (5′-3′) | Annealing T (°C) | Target size (bp) | Reference |
---|---|---|---|---|---|
rrs | Forward | TTGAGAGTTTGATCCTGGCTCAGAACG | 57 | 1499 | [12] |
Reverse | WAAGGWGGTAATCCAGC | ||||
gltA | Outer F | GCGATTTTAGAGTGYGGAGATTG | 55 | 1031 | [12] |
Outer R | TACAATACCGGAGTAAAAGTCAA | ||||
Inner F | TCATCTCCTGTTGCACGGTGCCC | 60 | 594 | [21] | |
Inner R | CTCTGAATGAACATGCCCACCCT | ||||
groEL | Forward | GCGAGGCGTTAGACAAGTCCATT | 58 | 1129 | [12] |
Reverse | TCCAGAGATGCAAGCGTGTATAG | ||||
msp2 | Outer F | GCGTGTTGATGGCTCTGGT | 52 | 1089 | [12] |
Outer R | ACCAGTATCCTTATTTTTACC | ||||
Inner F | GAGTGCACCAGAGCCTAGAA | 56 | 801 | This study | |
Inner R | TCACCATCACCAAGCACTCT | ||||
msp4 | Outer F | CAGTCTGCGCCTGCTCCCTAC | 55 | 757 | [12] |
Outer R | AGGAATCTTGCTCCAAGGTTA | ||||
Inner F | GGGTTCTGATATGGCATCTTC | 56 | 656 | [15] | |
Inner R | GGGAAATGTCCTTATAGGATTCG |