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Table 2 List of MHC I epitopes with characteristic affinity and coverage

From: An immunoinformatic approach driven by experimental proteomics: in silico design of a subunit candidate vaccine targeting secretory proteins of Leishmania donovani amastigotes

Epitope No.

Epitope sequence

Protein ID

Starting position

HLA supertype coverage

Tappred binding

VaxiJen score

IEDB class I score

No. of HLA alleles

World TPC (%)

Epitope conservancya in other Leishmania spp. in RefSeq database

Selfb

H1-01

LLYGGIFCY

E9B882

260

A1, A2, A3, A26, B58, B62

High

2.40

0.26

8

41.37

L. major, L. infantum, L. braziliensis, L. mexicana, L. guyanensis

No

H1-02

KIYANWPTY

E9BS02

189

A3, A26, B58, B62

High

1.41

0.25

15

63.11

L. major, L. infantum, L. mexicana

No

H1-03

FVAYFRTPL

E9BS02

77

A2, B7, B8, B39, B62

Medium

0.91

0.19

21

85.48

L. major, L. infantum, L. mexicana

No

H1-04

FVKWNFTAF

E9BI90

122

A24, A26, B7, B8, B62

Medium

1.08

0.31

16

67.98

L. infantum

No

H1-05

FMHVYTTHF

E9BIV4

119

A1, B8, B58, B62

Medium

0.77

0.14

19

83.44

L. major, L. infantum, L. mexicana

No

H1-06

HVYTTHFAY

E9BIV4

121

A1, A3, A26, B8, B58, B62

High

0.73

0.23

19

73.51

L. major, L. infantum, L. mexicana

No

H1-07

YVAFVERLY

E9BQ40

345

A1, A3, A26, B62

Medium

1.39

0.30

13

51.83

L. major, L. infantum, L. mexicana, L. braziliensis, L. panamensis

No

H1-08

RVAAALRIY

E9BUW4

58

A1, A3, A26, B58, B62

High

0.77

0.20

12

51.08

L. major, L. infantum, L. mexicana

No

H1-09

ATYAALLPL

E9BUW4

450

A2, B7, B58, B62

High

0.77

0.05

19

80.33

L. major, L. infantum, L. mexicana, L. braziliensis, L. panamensis

No

  1. a100% identity for absolute query cover
  2. bidentity threshold in human for amino acids > 7 (78%)