Fig. 2From: Genomic studies on Strongyloides stercoralis in northern and western ThailandPhylogenetic tree based on whole genome sequences. Sequences newly determined for this study are highlighted in color, followed by the cox1 haplotype number and the SSU HVR-I and HVR-IV haplotypes in parentheses. The colors indicate the provinces: red, Chiang Mai; blue, Lamphun; green, Lampang; grey, Mae Hong Son; yellow, Tak. For comparison, selected published S. stercoralis whole genome sequences described in recent whole genome-based S. stercoralis phylogenies are shown (not highlighted). Samples ending with “cam” are from Cambodia [16]. Samples starting with “My” and “Rk” are from Myanmar and Japan, respectively [23]. Sample cn-379 is from southern China [20]. sste_f1_ERR422406 is a free-living female of the S. stercoralis reference isolate [42]. If listed in the corresponding reference, the SSU HVR-I and HVR-IV haplotypes are indicated in parentheses (note that HVR-IV haplotype C in [20] is the same as HVR-IV haplotype E in [12]; this was noticed by Barratt et al. [22] and occurred because the two publications appeared almost simultaneously). Key for comparing samples from Cambodia with figure 4 of [20]: sste3_cam to sste26_cam correspond to Kh-3 to Kh-26; sste_DC51FLfemale1_cam = Kh-27; sste_DC51FLfemale2_cam = Kh-28; sste_DC51FLmale1_cam = Kh-29; sste_DC51FLmale3_cam = Kh-30; sste_DC69FLmale1_cam = Kh-31; sste_DC69FLmale3_cam = Kh-32; sste_DC69FLmale4_cam = Kh-33Back to article page