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Table 6 The msp1α microsatellite sequence analysis in Anaplasma marginale isolates from Egypt

From: Epidemiology and genotyping of Anaplasma marginale and co-infection with piroplasms and other Anaplasmataceae in cattle and buffaloes from Egypt

Isolate GenBank ID Genotype Structure of MSP1α tandem repeats No. of repeats m N SD-ATG distance
EL-Minia-43 MN257055 Minia-1 Eg21, Eg10, Eg11, Eg5 4 3 5 23
EL-Minia-44 MN257056 Minia-2 Eg10, Eg12, Eg13, Eg10 4 2 7 23
EL-Minia-45 MN257057 Minia-3 Eg14, Eg15, Eg16, Eg16, Eg16, Eg6 6 2 7 23
Assiut-59 MN273312 Assiut-1 Eg10, Eg11, Eg5 3 3 5 23
Assiut-105 MN385280 NV-1 Eg17, Eg23, Eg23, Eg23, Eg24 5 3 5 23
Assiut-214 MN273313 Assiut-2 Eg11, Eg11, Eg22, Eg22, Eg14 5 3 5 23
Assiut-Buffalo268 MN 311243 Assiut-3 Eg8, Eg1, Eg1, Eg2 4 3 5 23
Assiut-Buffalo269 MN311244 Assiut-4 Eg8, Eg3, Eg8, Eg4 4 3 5 23
EL-Fayoum-33 MN273314 Fayoum-1 Eg7, F, F, F 4 3 5 23
EL-Fayoum-185 MN385279 Fayoum-2 Eg3, Eg1, Eg3, Eg3 4 3 5 23
EL-Fayoum-Buffalo 288 MN 311245 Fayoum-3 Eg8, Eg5, Eg8, Eg20 4 3 5 23
EL-Fayoum-Buffalo 291 MN 311246 Fayoum-4 Eg8, Eg5, Eg8, Eg9 4 3 5 23
New Valley-136 MN370074 NV-1 Eg17, Eg23, Eg23, Eg23, Eg24 5 3 5 23
New Valley-311 MN370075 NV-1 Eg17, Eg23, Eg23, Eg23, Eg24 5 3 5 23
New Valley-133 MN370072 NV-1 Eg17, Eg23, Eg23, Eg23, Eg24 5 4 5 27
New Valley-134 MN370073 NV-1 Eg17, Eg23, Eg23, Eg23, Eg24 5 4 5 27
New Valley-2 MN370077 NV-2 τ, Eg19, Eg3, Eg25 4 3 7 27
New Valley-337 MN370071 NV-3 Eg17, Eg23, Eg18 3 3 7 27
New Valley-370 MN370076 NV-4 Eg23, Eg23, Eg23, Eg18 4 4 5 27
  1. Abbreviations: m, the number of repetitions of the nucleotide sequence G/A TTT; n, the number of repetitions of the nucleotide sequence GT; SD-ATG distance, distance calculated in nucleotides as (4 × m) + (2 × n) + 1