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Table 5 Cross-amplifications at 16 polymorphic loci in Trichinella spp.

From: Development of genome-wide polymorphic microsatellite markers for Trichinella spiralis

Locus/taxa T. spiralis
ISS4
T. nativa
ISS70
T. britovi
ISS100
T. pseudospiralis
ISS13
T. murrelli
ISS415
Trichinella T6
ISS34
Na Size (bp) Na Size (bp) Na Size (bp) Na Size (bp) Na Size (bp) Na Size (bp)
TsMs01 2 267–279 2 265–278 2 271–281 2 286–296 3 265–281
TsMs02 1 159 1 167 3 167–174 1 170 1 178 2 165–174
TsMs03 4 243–284 2 222–248 1 222 1 236 4 263–302 3 222–248
TsMs04 2 262–268 1 258 1 261 2 264–270 1 261
TsMs05 1 267 1 279 2 259–263 2 288–292 2 263–267 1 263
TsMs06 2 237–246 2 233–239 1 236 2 283–303 2 239–248 2 236–239
TsMs07 2 297–303 3 294–306 1 294 2 296–302 2 294–297
TsMs08 2 262–265 2 252–258 1 261 2 264–267 2 252–261
TsMs09 1 288 2 273–291 1 276 1 286 1 288 2 276–291
TsMs10 2 283–294 1 298 1 293 2 284–294 2 293–299
TsMs11 2 295–301 2 284–290 2 284–291 1 298 3 290–302 3 284–296
TsMs12 1 215 2 220–230 1 212 2 216–247 1 218 2 211–226
TsMs13 1 193 1 189 2 181–185 1 213 1 185 1 189
TsMs14 1 224 2 210–222 1 219 1 226 3 210–220
TsMs15 1 226 1 213 1 213 1 220 2 213–217 1 217
TsMs16 3 264–270 1 231 3 190–234 2 195–203 2 190–265 3 190–231
Locus/taxa T. nelsoni
ISS37
Trichinella T8
ISS124
Trichinella T9
ISS408
T. papuae
ISS572
T. zimbabwensis
ISS1029
T. patagoniensis
ISS1826
Na Size (bp) Na Size (bp) Na Size (bp) Na Size (bp) Na Size (bp) Na Size (bp)
TsMs01 3 265–302 3 265–302 3 269–289 2 286–296
TsMs02 3 158–179 2 158–165 4 158–175 2 158–170 1 158 1 178
TsMs03 5 222–267 5 222–258 6 222–252 2 241–247 1 241 4 262–301
TsMs04 3 258–267 2 247–261 3 255–261 2 264–270
TsMs05 1 259 1 263 1 259 1 272 1 276 2 267–271
TsMs06 2 236–239 2 236–242 2 236–242 1 225 2 224–256 3 239–248
TsMs07 3 285–306 2 288–294 2 288–294 1 285 2 296–302 2 284–293
TsMs08 3 252–261 3 252–261 3 255–264 2 252–258 2 261–264 2 264–267
TsMs09 2 273–282 3 270–288 2 273–282 1 280 1 272 1 288
TsMs10 3 284–298 3 275–298 4 284–304 2 284–293
TsMs11 4 281–296 4 284–297 4 278–288 2 286–296 2 286–296 2 296–302
TsMs12 3 215–237 3 211–242 4 215–240 1 217 1 248 1 218
TsMs13 1 177 1 177 1 185 1 207 1 207 1 185
TsMs14 2 210–220 2 210–220 2 214–220 1 226
TsMs15 1 225 1 217 1 213 1 219 1 210 1 224
TsMs16 2 190–222 3 190–234 5 190–245 1 191 2 199–203 2 190–265
  1. Abbreviation: Na, the number of alleles