Table 5 Cross-amplifications at 16 polymorphic loci in Trichinella spp.
From: Development of genome-wide polymorphic microsatellite markers for Trichinella spiralis
Locus/taxa | T. spiralis ISS4 | T. nativa ISS70 | T. britovi ISS100 | T. pseudospiralis ISS13 | T. murrelli ISS415 | Trichinella T6 ISS34 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Na | Size (bp) | Na | Size (bp) | Na | Size (bp) | Na | Size (bp) | Na | Size (bp) | Na | Size (bp) | |
TsMs01 | 2 | 267–279 | 2 | 265–278 | 2 | 271–281 | – | – | 2 | 286–296 | 3 | 265–281 |
TsMs02 | 1 | 159 | 1 | 167 | 3 | 167–174 | 1 | 170 | 1 | 178 | 2 | 165–174 |
TsMs03 | 4 | 243–284 | 2 | 222–248 | 1 | 222 | 1 | 236 | 4 | 263–302 | 3 | 222–248 |
TsMs04 | 2 | 262–268 | 1 | 258 | 1 | 261 | – | – | 2 | 264–270 | 1 | 261 |
TsMs05 | 1 | 267 | 1 | 279 | 2 | 259–263 | 2 | 288–292 | 2 | 263–267 | 1 | 263 |
TsMs06 | 2 | 237–246 | 2 | 233–239 | 1 | 236 | 2 | 283–303 | 2 | 239–248 | 2 | 236–239 |
TsMs07 | 2 | 297–303 | 3 | 294–306 | 1 | 294 | – | – | 2 | 296–302 | 2 | 294–297 |
TsMs08 | 2 | 262–265 | 2 | 252–258 | 1 | 261 | – | – | 2 | 264–267 | 2 | 252–261 |
TsMs09 | 1 | 288 | 2 | 273–291 | 1 | 276 | 1 | 286 | 1 | 288 | 2 | 276–291 |
TsMs10 | 2 | 283–294 | 1 | 298 | 1 | 293 | – | – | 2 | 284–294 | 2 | 293–299 |
TsMs11 | 2 | 295–301 | 2 | 284–290 | 2 | 284–291 | 1 | 298 | 3 | 290–302 | 3 | 284–296 |
TsMs12 | 1 | 215 | 2 | 220–230 | 1 | 212 | 2 | 216–247 | 1 | 218 | 2 | 211–226 |
TsMs13 | 1 | 193 | 1 | 189 | 2 | 181–185 | 1 | 213 | 1 | 185 | 1 | 189 |
TsMs14 | 1 | 224 | 2 | 210–222 | 1 | 219 | – | – | 1 | 226 | 3 | 210–220 |
TsMs15 | 1 | 226 | 1 | 213 | 1 | 213 | 1 | 220 | 2 | 213–217 | 1 | 217 |
TsMs16 | 3 | 264–270 | 1 | 231 | 3 | 190–234 | 2 | 195–203 | 2 | 190–265 | 3 | 190–231 |
Locus/taxa | T. nelsoni ISS37 | Trichinella T8 ISS124 | Trichinella T9 ISS408 | T. papuae ISS572 | T. zimbabwensis ISS1029 | T. patagoniensis ISS1826 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Na | Size (bp) | Na | Size (bp) | Na | Size (bp) | Na | Size (bp) | Na | Size (bp) | Na | Size (bp) | |
TsMs01 | 3 | 265–302 | 3 | 265–302 | 3 | 269–289 | – | – | – | – | 2 | 286–296 |
TsMs02 | 3 | 158–179 | 2 | 158–165 | 4 | 158–175 | 2 | 158–170 | 1 | 158 | 1 | 178 |
TsMs03 | 5 | 222–267 | 5 | 222–258 | 6 | 222–252 | 2 | 241–247 | 1 | 241 | 4 | 262–301 |
TsMs04 | 3 | 258–267 | 2 | 247–261 | 3 | 255–261 | – | – | – | – | 2 | 264–270 |
TsMs05 | 1 | 259 | 1 | 263 | 1 | 259 | 1 | 272 | 1 | 276 | 2 | 267–271 |
TsMs06 | 2 | 236–239 | 2 | 236–242 | 2 | 236–242 | 1 | 225 | 2 | 224–256 | 3 | 239–248 |
TsMs07 | 3 | 285–306 | 2 | 288–294 | 2 | 288–294 | 1 | 285 | 2 | 296–302 | 2 | 284–293 |
TsMs08 | 3 | 252–261 | 3 | 252–261 | 3 | 255–264 | 2 | 252–258 | 2 | 261–264 | 2 | 264–267 |
TsMs09 | 2 | 273–282 | 3 | 270–288 | 2 | 273–282 | 1 | 280 | 1 | 272 | 1 | 288 |
TsMs10 | 3 | 284–298 | 3 | 275–298 | 4 | 284–304 | – | – | – | – | 2 | 284–293 |
TsMs11 | 4 | 281–296 | 4 | 284–297 | 4 | 278–288 | 2 | 286–296 | 2 | 286–296 | 2 | 296–302 |
TsMs12 | 3 | 215–237 | 3 | 211–242 | 4 | 215–240 | 1 | 217 | 1 | 248 | 1 | 218 |
TsMs13 | 1 | 177 | 1 | 177 | 1 | 185 | 1 | 207 | 1 | 207 | 1 | 185 |
TsMs14 | 2 | 210–220 | 2 | 210–220 | 2 | 214–220 | – | – | – | – | 1 | 226 |
TsMs15 | 1 | 225 | 1 | 217 | 1 | 213 | 1 | 219 | 1 | 210 | 1 | 224 |
TsMs16 | 2 | 190–222 | 3 | 190–234 | 5 | 190–245 | 1 | 191 | 2 | 199–203 | 2 | 190–265 |