Table 2 Number of genes matched to reference genomes in individual pooled DNA sample using mNGS
Taxonomy | Pooled tick DNA samples | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
P1 | P2 | P3 | P4 | P5 | P6 | P7 | P8 | P9 | P10 | |
Pseudomonas | 61,323 | 0 | 9 | 81 | 8984 | 12,303 | 39 | 1079 | 305 | 29 |
Stenotrophomonas | 11,392 | 2 | 0 | 1 | 38 | 11 | 1 | 5 | 4 | 0 |
Sphingobacterium | 7157 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Serratia | 4748 | 0 | 1 | 1 | 2 | 1 | 1 | 4 | 2 | 0 |
Corynebacterium | 100 | 2 | 3 | 13 | 7 | 2 | 1 | 4 | 2 | 62 |
Rickettsia | 78 | 2002 | 1688 | 1922 | 1978 | 1968 | 1339 | 2026 | 2044 | 1647 |
Psychrobacter | 2 | 6 | 0 | 12 | 504 | 953 | 220 | 880 | 140 | 1423 |
Anaplasma | 157 | 5 | 6 | 5 | 7 | 5 | 4 | 5 | 416 | 158 |
Coxiella | 54 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 81 | 66 |
Rhizophagus | 29 | 1 | 2 | 2 | 1 | 2 | 0 | 2 | 111 | 71 |