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Table 2 Number of genes matched to reference genomes in individual pooled DNA sample using mNGS

From: Identification of tick-borne pathogens by metagenomic next-generation sequencing in Dermacentor nuttalli and Ixodes persulcatus in Inner Mongolia, China

Taxonomy Pooled tick DNA samples
P1 P2 P3 P4 P5 P6 P7 P8 P9 P10
Pseudomonas 61,323 0 9 81 8984 12,303 39 1079 305 29
Stenotrophomonas 11,392 2 0 1 38 11 1 5 4 0
Sphingobacterium 7157 0 0 0 0 0 0 0 0 0
Serratia 4748 0 1 1 2 1 1 4 2 0
Corynebacterium 100 2 3 13 7 2 1 4 2 62
Rickettsia 78 2002 1688 1922 1978 1968 1339 2026 2044 1647
Psychrobacter 2 6 0 12 504 953 220 880 140 1423
Anaplasma 157 5 6 5 7 5 4 5 416 158
Coxiella 54 0 0 0 0 0 0 0 81 66
Rhizophagus 29 1 2 2 1 2 0 2 111 71