Table 2 Single-nucleotide polymorphism (SNP) sites in the Pfs25 gene of Plasmodium falciparum
Haplotype | Nucleotide position | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
117 | 226 | 333 | 392 | 412 | 428 | 433 | 519 | 561 | 651 | |
H1 | AGT | GAT | AAG | GGA | GGC | GTA | GAT | GGA | AAT | ATG |
Ser | Asp | Lys | Gly | Gly | Val | Asp | Gly | Asn | Met | |
H2 | – | – | – | GCA | – | – | – | – | – | – |
– | – | – | Ala | – | – | – | – | – | – | |
H3 | – | – | – | GCA | – | GCA | – | – | – | – |
– | – | – | Ala | – | Ala | – | – | – | – | |
H4 | – | – | – | GCA | – | – | AAT | – | – | – |
– | – | – | Ala | – | – | Asn | – | – | – | |
H5 | – | – | AAA | GCA | – | – | – | – | – | – |
– | – | Lys | Ala | – | – | – | – | – | – | |
H6 | AGC | – | – | – | – | – | – | – | – | – |
Ser | – | – | – | – | – | – | – | – | – | |
H7 | – | AAT | – | GCA | – | – | –– | – | – | – |
– | Asn | – | Ala | – | – | – | – | – | – | |
H8 | – | – | – | – | – | – | – | – | – | ATA |
– | – | – | – | – | – | – | – | – | Ile | |
H9 | – | – | – | – | – | GCA | – | – | – | – |
– | – | – | – | – | Ala | – | – | – | – | |
H10 | – | – | – | – | – | – | – | GGG | – | – |
– | – | – | – | – | – | – | Gly | – | – | |
H11 | – | – | – | GCA | AGC | GCA | – | – | AAA | – |
– | – | – | Ala | Ser | Ala | – | – | Lys | – | |
Frequency | 0.990 | 0.987 | 0.997 | 0.726 | 0.997 | 0.964 | 0.997 | 0.997 | 0.997 | 0.994 |
of H1 SNP | ||||||||||