Unveiling of brain transcriptome of masked palm civet (Paguma larvata) with chronic infection of Toxoplasma gondii

Table 2 Results from the RNA-sequencing clean data analysis

Source of sample	Sample	Raw reads	Clean reads	Clean bases	Error (%)	Q20 (%)^a	Q30 (%)^a	GC content (%)
Infected animal	M_1	23,038,190	21,613,812	6.48G	0.03	97.79	94.17	52.91
	M_2	23,687,149	22,424,278	6.73G	0.03	97.86	94.2	52.16
	M_3	22,740,572	21,415,289	6.42G	0.03	97.82	94.21	52.87
Control animal	cM_1	23,501,179	22,220,310	6.67G	0.03	97.73	93.98	52.6
	cM_2	21,444,553	20,346,356	6.10G	0.03	97.73	94.04	53.5
	cM_3	23,479,997	21,996,776	6.60G	0.02	97.93	94.53	52.93

^aQ20, quality score of 20, representing an error rate of 1 in 100; Q30 indicates that all of the reads will be perfect, with no errors or ambiguities

ISSN: 1756-3305