From: First genetic report of Ixodes kashmiricus and associated Rickettsia sp.
Organism/gene | PCR | Primer | Sequence 5' to 3' | Amplicon size | References |
---|---|---|---|---|---|
Tick/16S rRNA | PCR | 16S + 1 | CCGGTCTGAACTCAGATCAAGT | 460 bp | [40] |
16S-1 | GCTCAATGATTTTTTAAATTGCTG | ||||
Tick/ITS2 | PCR | 5.8S | CCATCGATGTGAAYTGCAGGACA | 800Â bp | [41] |
28S | GTGAATTCTATGCTTAAATTCAGGGGT | ||||
Rickettsia spp./gltA | RT-PCR | CS-5 | GAGAGAAAATTATATCCAAATGTTGAT | 147Â bp | [42] |
CS-6 | AGGGTCTTCGTGCATTTCTT | ||||
Rickettsia spp./gltA | PCR | CS-78 | GCAAGTATCGGTGAGGATGTAAT | 401Â bp | [42] |
CS-323 | GCTTCCTAAAATTCAATAAATCAGGAT | ||||
Rickettsia spp./ompA | PCR | Rr190.70 | ATGGCGAATATTTCTCCAAAA | 631Â bp | [43] |
Rr190.701 | GTTCCGTTAATGGCAGCATCT |