Table 3 Primers used for generating 1500-bp amplicons from RRV
From: Fine-scale genomic tracking of Ross River virus using nanopore sequencing
Primer name | Primer sequence (5′–3′) | Location in RRV genome |
|---|---|---|
RRV_New_1500_1_LEFT | ATGACCATGCTAATGCCAGAGC | Â |
RRV_New_1500_1_RIGHT | ATTCCTGGGTGTCTCCACTACC | Â |
RRV_New_1500_2_LEFT | CGTACTCTGGAGACCGAAACGA | Â |
RRV_New_1500_2_RIGHT | ATGTTGTCATGCTCCTCTTGCC | Â |
RRV_New_1500_3_LEFT | AGGCAGAAAGTGAATGAAAACCC | Â |
RRV_New_1500_3_RIGHT | GACAACAGAGGGATGGCTACAC | Â |
RRV_New_1500_4_LEFT | ATGAATGTCATCCACGCGGTAG | Â |
RRV_New_1500_4_RIGHT | ATCAGACGAGAAGATGTACGCC | Â |
RRV_New_1500_5_LEFT | GCACCTGAAGATCTGGAGGTAC | Â |
RRV_New_1500_5_RIGHT | CAGTACACGGCATGCTATGACA | Â |
RRV_New_1500_6_LEFT | CTCGGGGTTGACCAAGAACTAC | Â |
RRV_New_1500_6_RIGHT | ACCCGAGTGACCATGTCTTTTG | Â |
RRV_New_1500_7_LEFT | GAAGGTTTACCATCCCCACAGG | E2/E3 |
RRV_New_1500_7_RIGHT | AGAGTTAGGAGGGCCATCAGAC | E2/E3 |
RRV_New_1500_8_LEFT | CCAGTGACGGAAGAAGGGATTG | Â |
RRV_New_1500_8_RIGHT | TTGGAATGTGAGTGGACAGCG | Â |
RRV_New_1500_9_LEFT | TCTGTGGGACGAGAACAAAACC | Â |
RRV_New_1500_9_RIGHT | ACTAAAGCTTACCGACGCATTGT | Â |