Skip to main content

Table 1 Metadata of the RNA-seq samples in this study

From: Transcriptional patterns of sexual dimorphism and in host developmental programs in the model parasitic nematode Heligmosomoides bakeri

Sample name

File name

# worms extracted

Days post infection

RIN

Reads uniquely mapped/total reads (%)

Included in pairwise comparisons?

D5 F2

D5-F2_Li29408_S5

174

5

9.6

112,169,129/118,520,168 (94.64)

Yes

D5 F3

D5-F3_Li29409_S6

297

5

9.4

129,241,490/136,943,707 (94.38)

Yes

D5 F4

D5-F4_Li29410_S7

173

5

9.3

107,651,456/113,590,373 (94.77)

Yes

D5 F5

D5-F5_Li29411_S8

232

5

9.5

118,950,175/125,198,338 (95.01)

Yes

D5 M1

D5-M1_Li29404_S1

132

5

9.3

128,308,873/135,898,387 (94.42)

Yes

D5 M2

D5-M2_Li29405_S2

100

5

9.5

124,417,881/131,400,648 (94.69)

Yes

D5 M4

D5-M4_Li29406_S3

95

5

9.6

138,697,190/146,832,868 (94.46)

Yes

D5 M5

D5-M5_Li29407_S4

179

5

9.6

134,892,659/142,089,783 (94.93)

Yes

D7 F1

D7-F1_Li29416_S13

150

7

9.4

108,668,904/114,523,342 (94.89)

Yes

D7 F4

D7-F4_Li29417_S14

211

7

9.2

141,571,706/149,554,981 (94.66)

Yes

D7 F5

D7-F5_Li29418_S15

120

7

9.4

131,197,468/138,924,573 (94.44)

Yes

D7 F6

D7-F6_Li29419_S16

205

7

9.4

144,299,969/153,229,819 (94.17)

Yes

D7 M1

D7-M1_Li29412_S9

126

7

9.5

135,646,150/143,790,919 (94.34)

Yes

D7 M2

D7-M2_Li29413_S10

89

7

9.3

138,636,801/147,210,080 (94.18)

Yes

D7 M4

D7-M4_Li29414_S11

144

7

9.6

113,177,165/119,922,840 (94.37)

Yes

D7 M7

D7-M7_Li29415_S12

85

7

9.7

117,210,623/124,680,285 (94.01)

Yes

D10 F1

D10-F1_Li29424_S21

100

10

9.6

126,048,861/132,664,380 (95.01)

Yes

D10 F2

D10-F2_Li29425_S22

100

10

9.9

117,253,862/123,536,616 (94.91)

Yes

D10 F6

D10-F6_Li29426_S23

80

10

9.7

128,203,029/136,497,304 (93.92)

No

D10 F7

D10-F7_Li29427_S24

80

10

9.8

130,193,841/138,092,543 (94.28)

No

D10 F8

D10-F8_Li31315_S1

80

10

9.4

166,132,630/173,733,692 (95.62)

Yes

D10 F9

D10-F9_Li31316_S2

80

10

9.2

196,647,784/205,996,448 (95.46)

Yes

D10 F10

D10-F10_Li31317_S3

80

10

9.3

170,031,664/178,491,143 (95.26)

Yes

D10 F11

D10-F11_Li31318_S4

80

10

9.2

162,920,697/170,951,647 (95.30)

Yes

D10 F13

D10-F13_Li31319_S5

80

10

9.5

147,832,599/155,432,294 (95.11)

Yes

D10 M1

D10-M1_Li29420_S17

100

10

9.4

135,805,443/145,141,041 (93.57)

Yes

D10 M2

D10-M2_Li29421_S18

100

10

9.6

128,421,348/137,123,098 (93.65)

Yes

D10 M3

D10-M3_Li29422_S19

80

10

9.5

130,675,067/138,649,879 (94.25)

Yes

D10 M6

D10-M6_Li29423_S20

80

10

9.8

110,098,546/116,957,271 (94.14)

Yes

D21 F5

D21-F5_Li29432_S29

80

21

9.1

108,798,485/114,364,046 (95.13)

Yes

D21 F6

D21-F6_Li29433_S30

80

21

9.5

100,100,633/104,891,911 (95.43)

Yes

D21 F11

D21-F11_Li29434_S31

80

21

9.4

98,844,233/103,850,834 (95.18)

Yes

D21 F12

D21-F12_Li29435_S32

80

21

4.9

100,561,928/105,898,940 (94.96)

Yes

D21 M5

D21-M5_Li29428_S25

80

21

9

114,067,372/122,106,224 (93.42)

Yes

D21 M7

D21-M7_Li29429_S26

80

21

8.7

122,812,424/131,448,504 (93.43)

Yes

D21 M12

D21-M12_Li29430_S27

80

21

9.2

122,775,218/130,863,303 (93.82)

Yes

D21 M13

D21-M13_Li29431_S28

80

21

9.1

104,773,522/112,342,173 (93.26)

Yes