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Table 1 Nucleotide polymorphisms and allele frequencies of the Plasmodium vivax etramp11.2 gene in natural isolates of P. vivax

From: Reduced polymorphism of Plasmodium vivax early transcribed membrane protein (PvETRAMP) 11.2

Allelea

Nucleotide position

Latin Americab

SEA/PNGb

 

66

96

198

269

320

325

326

Brazil

Peru

Peru_PDB

Colombia

Mexico

China

Myanmar

Papua NG

Thailand

Total

H1

C

A

C

A

G

A

T

37 (54.4)

11 (30.6)

4 (15.4)

3 (13.0)

5 (33.3)

    

60

H2

C

A

C

G

T

A

G

5(7.3)

    

8 (80.0)

9 (75.0)

3 (75.0)

14 (100.0)

39

H3

C

A

C

G

G

A

T

1 (1.5)

 

2 (7.7)

  

1 (10.0)

   

4

H4

C

G

C

G

T

A

G

   

3 (13.0)

     

3

H5

T

A

C

G

T

A

G

  

3 (11.5)

2 (8.7)

     

5

H6

C

A

G

A

T

A

G

8 (11.8)

7 (19.4)

2 (7.7)

6 (26.2)

4 (26.7)

    

27

H7

C

A

C

A

T

A

G

1 (1.5)

14 (38.9)

14 (53.9)

9 (39.1)

1 (6.7)

 

1 (8.3)

  

40

H8

C

A

G

A

G

A

T

12 (17.6)

   

5 (33.3)

    

17

H9

C

A

C

G

G

A

G

 

3 (8.3)

     

1 (25.0)

 

4

H10

C

A

C

G

T

G

G

4 (5.9)

 

1 (3.8)

      

5

H11

C

A

C

A

G

A

G

 

1 (2.8)

   

1 (10.0)

2 (16.7)

  

4

Total

 

68

36

26

23

15

10

12

4

14

208

  1. Pap NG Papua New Guinea, SEA/PNG Southeast Asia/Papua New Guinea
  2. aThe 11 alleles are defined by the substitutions observed at 7 nucleotide positions. The nucleotides are numbered according to the Salvador-1 (Sal-1) reference strain, which corresponds to the H1 allele. Nucleotide substitutions are shown with underlining
  3. bValues for frequencies are presented as the number of samples in which the allele was found, with the percentage given in parentheses