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Table 1 Leishmania infantum strains, clinical isolates and clinical samples analyzed in this study

From: High-resolution melting (HRM)-based detection of polymorphisms in the malic enzyme and glucose-6-phosphate isomerase genes for Leishmania infantum genotyping

Sample number

Sample ID

Type of sample

Zymodeme

Host

Geographic origin

1

MCAN/ES/98/LLM-7241

Reference strain

MON-1

Dog

Spain

2

MHOM/PT/2000/IMT2601

Reference strain

MON-1

Human

Portugal

3

MHOM/ES/1986/BCN161

Reference strain

MON-1

Human

Spain

4

MHOM/FR/1997/LSL291

Reference strain

MON-1

Human

France

5

MHOM/ES/1993/PM11

Reference strain

MON-1

Human

Spain

6

MHOM/FR/1995/LPN1141

Reference strain

MON-1

Human

France

7

MHOM/FR/1996/LEM32491

Reference strain

MON-29

Human

France

8

MHOM/ES/1991/LEM22981

Reference strain

MON-183

Human

Spain

9

MHOM/ES/1988/LLM1751

Reference strain

MON-198

Human

Spain

10

MHOM/IT/1994/ISS10361

Reference strain

MON-228

Human

Italy

11

MHOM/ES/1992/LLM3731

Reference strain

MON-199

Human

Spain

12

MHOM/MT/1985/BUCK1

Reference strain

MON-78

Human

Malta

13

MHOM/FR/78/LEM752

Reference strain

MON-1

Human

France

14

MHOM/TN/80/IPT12

Reference strain

MON-1

Human

Tunisia

15

MHOM/DZ/82/LIPA59

Reference strain

MON-24

Human

Algeria

16

MHOM/ES/81/BCN1

Reference strain

MON-29

Human

Spain

17

MHOM/IT/86/ISS218

Reference strain

MON-72

Human

Italy

18

MHOM/IT/93/ISS822

Reference strain

MON-201

Human

Italy

19

MHOM/IT/08/31U2

Reference strain

MON-1

Human

Palermo (Italy)

20

MHOM/IT/08/49U

Reference strain

MON-1

Human

Palermo (Italy)

21

Pan-302

Clinical isolate (lymph node aspirate)

 

Dog

Pantelleria (Italy)

22

Pan-422

Clinical isolate (lymph node aspirate)

 

Dog

Pantelleria (Italy)

23

Pan-642

Clinical isolate (lymph node aspirate)

 

Dog

Pantelleria (Italy)

24

10816

Clinical isolate (lymph node aspirate)

MON-1

Cat

Palermo (Italy)

25

V2921

Clinical isolate (spleen)

MON-1

Marten

Palermo (Italy)

26

791

Clinical isolate (lymph node aspirate)

MON-1

Cat

Messina (Italy)

27

MHOM/IT/2019/cur-12

Clinical isolate (cutaneous biopsy)

 

Human

Pesaro-Urbino (Italy)

28

Elr-sci2

Clinical isolate (lymph node aspirate)

 

Dog

Pesaro-Urbino (Italy)

29

Bra-aii2

Clinical isolate (lymph node aspirate)

 

Dog

Pesaro-Urbino (Italy)

30

Plo-roi

Clinical sample (bone marrow)

 

Dog

Pesaro-Urbino (Italy)

31

Aro-sai

Clinical sample (conjunctival swab)

 

Dog

Pesaro-Urbino (Italy)

32

Els-maia

Clinical sample (conjunctival swab)

 

Dog

Pesaro-Urbino (Italy)

33

Els-maib

Clinical sample (conjunctival swab)

 

Dog

Pesaro-Urbino (Italy)

34

Toy-gai

Clinical sample (lymph node aspirate)

 

Dog

Pesaro-Urbino (Italy)

35

Koa-cro

Clinical sample (lymph node aspirate)

 

Dog

Pesaro-Urbino (Italy)

36

Zeo-sci

Clinical sample (lymph node aspirate)

 

Dog

Pesaro-Urbino (Italy)

37

Gia-spi

Clinical sample (conjunctival swab)

 

Dog

Pesaro-Urbino (Italy)

38

Grg-rao

Clinical sample (buffy coat)

 

Dog

Pesaro-Urbino (Italy)

39

Vea-fri

Clinical sample (bone marrow)

 

Dog

Pesaro-Urbino (Italy)

40

Jon-doe

Clinical sample (peripheral blood)

 

Dog

Pesaro-Urbino (Italy)

41

Pan-1

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

42

Pan-2

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

43

Pan-4

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

44

Pan-5

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

45

Pan-6

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

46

Pan-9

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

47

Pan-10

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

48

Pan-11

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

49

Pan-12

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

50

Pan-13

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

51

Pan-14

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

52

Pan-15

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

53

Pan-16

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

54

Pan-21

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

55

Pan-22

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

56

Pan-24

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

57

Pan-25

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

58

Pan-26

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

59

Pan-27

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

60

Pan-28

Clinical sample (lymph node aspirate)

 

Dog

Pantelleria (Italy)

61

Psalb

Clinical sample (buffy coat)

 

Human

Pesaro-Urbino (Italy)

62

Dae-dio

Clinical sample (cutaneous biopsy)

 

Human

Pesaro-Urbino (Italy)

63

Mao-pai

Clinical sample (skin scraping)

 

Human

Pesaro-Urbino (Italy)

64

Gae-bea

Clinical sample (skin scraping)

 

Human

Pesaro-Urbino (Italy)

65

Kua-asn

Clinical sample (skin scraping)

 

Human

Pesaro-Urbino (Italy)

66

1038U

Clinical sample (peripheral blood)

 

Human

Messina (Italy)

67

1522U

Clinical sample (peripheral blood)

 

Human

Catania (Italy)

68

1536U

Clinical sample (peripheral blood)

 

Human

Messina (Italy)

69

1538U

Clinical sample (peripheral blood)

 

Human

Messina (Italy)

70

1578U

Clinical sample (peripheral blood)

 

Human

Catania (Italy)

71

1758U

Clinical sample (skin scraping)

 

Human

Palermo (Italy)

72

1759U

Clinical sample (skin scraping)

 

Human

Agrigento (Italy)

73

1761U

Clinical sample (skin scraping)

 

Human

Agrigento (Italy)

74

1810U

Clinical sample (peripheral blood)

 

Human

Agrigento (Italy)

75

2000U

Clinical sample (skin scraping)

 

Human

Agrigento (Italy)

76

2068U

Clinical sample (skin scraping)

 

Human

Palermo (Italy)

77

2073U

Clinical sample (skin scraping)

 

Human

Agrigento (Italy)

78

2579U

Clinical sample (peripheral blood)

 

Human

Palermo (Italy)

79

2596U

Clinical sample (peripheral blood)

 

Human

Palermo (Italy)

80

2602U

Clinical sample (peripheral blood)

 

Human

Ragusa (Italy)

81

2604U

Clinical sample (peripheral blood)

 

Human

Agrigento (Italy)

82

2618U

Clinical sample (peripheral blood)

 

Human

Messina (Italy)

83

2619U

Clinical sample (peripheral blood)

 

Human

Messina (Italy)

84

2626U

Clinical sample (peripheral blood)

 

Human

Agrigento (Italy)

85

2629U

Clinical sample (peripheral blood)

 

Human

Agrigento (Italy)

86

2632U

Clinical sample (cutaneous biopsy)

 

Human

Messina (Italy)

87

2647U

Clinical sample (cutaneous biopsy)

 

Human

Messina (Italy)

88

2652U

Clinical sample (peripheral blood)

 

Human

Catania (Italy)

89

2660U

Clinical sample (skin scraping)

 

Human

Messina (Italy)

90

2668U

Clinical sample (peripheral blood)

 

Human

Enna (Italy)

91

2669U

Clinical sample (peripheral blood)

 

Human

Catania (Italy)

92

2746U

Clinical sample (skin scraping)

 

Human

Palermo (Italy)

93

2897U

Clinical sample (skin scraping)

 

Human

Palermo (Italy)

  1. MLST Multilocus sequence typing, MON parasite typing system of the Centre for Leishmaniasis of Montpellier (France)
  2. 1Sample sequences available on the database and published in Ceccarelli et al. [10]
  3. 2Selected for MLST analysis
  4. Els-maia was a left conjunctival swab; Els-maib was a right conjunctival swab