cox 1 haplotypes (HK1-HK23) | Cox1 haplotypes original name and GenBank ID | Country | Hosts | References |
---|---|---|---|---|
HK1 | B16 (JQ663994) JN882301 OQ569719* OQ569720* OQ569721* OQ569729* | Germany Austria Serbia Serbia Serbia Serbia | Felis silvestris catus, Microtus arvalis Apodemus flavicollis Crocidura leucodon Apodemus flavicollis Apodemus flavicollis | [25] [2] |
HK2 | B7 (KT693082) OQ569722* OQ569723* OQ569726* | Finland Serbia Serbia Serbia | Felis silvestris catus Apodemus agrarius Apodemus flavicollis Apodemus flavicollis | [2] |
HK3 | SRB1 (OQ569724)* SRB1 (OQ569730)* | Serbia Serbia | Apodemus flavicollis Apodemus flavicollis | |
HK4 | SRB2 (OQ569725)* | Serbia | Apodemus flavicollis | |
HK5 | B3 (EU861478) B12 (KT693087) AB731761 MT407624 JQ837814 MN514030 MN514032 OQ569727* | Finland Finland Finland Estonia Czech Republic Poland Poland Serbia | Felis catus, Felis silvestris catus Felis catus Felis catus Falco tinnunculus Microtus arvalis Myodes glareolus Apodemus flavicollis | [15] [2] |
HK6 | SRB3 (OQ569728)* | Serbia | Apodemus flavicollis | |
HK7 | SRB4 (OQ569731)* | Serbia | Apodemus flavicollis | |
HK8 | B1 (KT693076) | Latvia | Apodemus flavicollis | [2] |
HK9 | B2 (KT693077) | Bosnia and Herzegovina | Apodemus flavicollis | [2] |
HK10 | B4 (KT693079) | Finland | Microtus agrestis | [2] |
HK11 | B5 (KT693080) | Norway | Microtus agrestis | [2] |
HK12 | B6 (KT693081) B19 (KT693091) | Finland, Russia-Western Siberia | Felis silvestris catus Microtus agrestis | [2] |
HK13 | B8 (KT693083) | Finland | Felis silvestris catus | [2] |
HK14 | B9 (KT693084) | Finland | Felis silvestris catus | [2] |
HK15 | B10 (KT693085) | Finland | Felis silvestris catus | [2] |
HK16 | B11 (KT693086) | Sweden | Arvicola amphibius | [2] |
HK17 | B13 (KT693088) | Finland | Felis silvestris catus | [2] |
HK18 | B14 (EU544596) | Turkey | Apodemus sylvaticus | [2] |
HK19 | B15 (FN547850) | Italy | Felis silvestris silvestris | [2] |
HK20 | B17(KT693089) B18 (KT693090) | European Russia European Russia | Apodemus uralensis Apodemus uralensis | [2] |
HK21 | B20 (KT693092) | Russia-Western Siberia | Alticola strelzowi | [2] |
HK22 | B21 (KT693093) | Russia-Western Siberia | Mus musculus | [2] |
HK23 | B22 (KT693094) | Russia-Western Siberia | Myodes rutilus | [2] |