Fig. 3
Violin plots showing the distribution of per-gene genetic diversity estimates per site corrected for polymorphism (dA). Estimates are given for each gene type: vector-upregulated (yellow), reservoir-upregulated (orange) or core (blue) genes. a The distribution of dA values for non-synonymous sites, b the distribution of dA values for synonymous sites. All pairwise comparisons were non-significant except that between vector-upregulated genes and core genes for non-synonymous sites, which was significant at P = 0.0009 (Kruskal–Wallis rank sum test: χ2 = 14.10, df = 2). ns, Non-significant